Yang P - Search Results

1

Feature selection revisited in the single-cell era.

Yang P, Huang H, Liu C. Yang P, et al. Genome Biol. 2021 Dec 1;22(1):321. doi: 10.1186/s13059-021-02544-3. Genome Biol. 2021. PMID: 34847932 Free PMC article. Review.

2

Evaluating stably expressed genes in single cells.

Lin Y, Ghazanfar S, Strbenac D, Wang A, Patrick E, Lin DM, Speed T, Yang JYH, Yang P. Lin Y, et al. Among authors: yang jyh, yang p. Gigascience. 2019 Sep 1;8(9):giz106. doi: 10.1093/gigascience/giz106. Gigascience. 2019. PMID: 31531674 Free PMC article.

3

Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis.

Geddes TA, Kim T, Nan L, Burchfield JG, Yang JYH, Tao D, Yang P. Geddes TA, et al. Among authors: yang jyh, yang p. BMC Bioinformatics. 2019 Dec 24;20(Suppl 19):660. doi: 10.1186/s12859-019-3179-5. BMC Bioinformatics. 2019. PMID: 31870278 Free PMC article.

4

scDC: single cell differential composition analysis.

Cao Y, Lin Y, Ormerod JT, Yang P, Yang JYH, Lo KK. Cao Y, et al. Among authors: yang jyh, yang p. BMC Bioinformatics. 2019 Dec 24;20(Suppl 19):721. doi: 10.1186/s12859-019-3211-9. BMC Bioinformatics. 2019. PMID: 31870280 Free PMC article.

5

scReClassify: post hoc cell type classification of single-cell rNA-seq data.

Kim T, Lo K, Geddes TA, Kim HJ, Yang JYH, Yang P. Kim T, et al. Among authors: yang jyh, yang p. BMC Genomics. 2019 Dec 24;20(Suppl 9):913. doi: 10.1186/s12864-019-6305-x. BMC Genomics. 2019. PMID: 31874628 Free PMC article.

6

A benchmark study of simulation methods for single-cell RNA sequencing data.

Cao Y, Yang P, Yang JYH. Cao Y, et al. Among authors: yang jyh, yang p. Nat Commun. 2021 Nov 25;12(1):6911. doi: 10.1038/s41467-021-27130-w. Nat Commun. 2021. PMID: 34824223 Free PMC article.

7

Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data.

Yu L, Cao Y, Yang JYH, Yang P. Yu L, et al. Among authors: yang jyh, yang p. Genome Biol. 2022 Feb 8;23(1):49. doi: 10.1186/s13059-022-02622-0. Genome Biol. 2022. PMID: 35135612 Free PMC article.

8

Computational approaches for direct cell reprogramming: from the bulk omics era to the single cell era.

Tran A, Yang P, Yang JYH, Ormerod J. Tran A, et al. Among authors: yang jyh, yang p. Brief Funct Genomics. 2022 Jul 27;21(4):270-279. doi: 10.1093/bfgp/elac008. Brief Funct Genomics. 2022. PMID: 35411370 Free PMC article.

9

Mouse organogenesis atlas at single-cell resolution.

Yang P, Tam PPL. Yang P, et al. Cell. 2022 May 12;185(10):1625-1627. doi: 10.1016/j.cell.2022.04.026. Cell. 2022. PMID: 35561663 Free article.

10

Multi-task learning from multimodal single-cell omics with Matilda.

Liu C, Huang H, Yang P. Liu C, et al. Among authors: yang p. Nucleic Acids Res. 2023 May 8;51(8):e45. doi: 10.1093/nar/gkad157. Nucleic Acids Res. 2023. PMID: 36912104 Free PMC article.

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