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SMaSH: Sample matching using SNPs in humans.
Westphal M, Frankhouser D, Sonzone C, Shields PG, Yan P, Bundschuh R. Westphal M, et al. Among authors: yan p. BMC Genomics. 2019 Dec 30;20(Suppl 12):1001. doi: 10.1186/s12864-019-6332-7. BMC Genomics. 2019. PMID: 31888490 Free PMC article.
Methods for high-throughput MethylCap-Seq data analysis.
Rodriguez BA, Frankhouser D, Murphy M, Trimarchi M, Tam HH, Curfman J, Huang R, Chan MW, Lai HC, Parikh D, Ball B, Schwind S, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez BA, et al. Among authors: yan p. BMC Genomics. 2012;13 Suppl 6(Suppl 6):S14. doi: 10.1186/1471-2164-13-S6-S14. Epub 2012 Oct 26. BMC Genomics. 2012. PMID: 23134780 Free PMC article.
Enrichment-based DNA methylation analysis using next-generation sequencing: sample exclusion, estimating changes in global methylation, and the contribution of replicate lanes.
Trimarchi MP, Murphy M, Frankhouser D, Rodriguez BA, Curfman J, Marcucci G, Yan P, Bundschuh R. Trimarchi MP, et al. Among authors: yan p. BMC Genomics. 2012;13 Suppl 8(Suppl 8):S6. doi: 10.1186/1471-2164-13-S8-S6. Epub 2012 Dec 17. BMC Genomics. 2012. PMID: 23281662 Free PMC article.
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data.
Frankhouser DE, Murphy M, Blachly JS, Park J, Zoller MW, Ganbat JO, Curfman J, Byrd JC, Lin S, Marcucci G, Yan P, Bundschuh R. Frankhouser DE, et al. Among authors: yan p. Bioinformatics. 2014 Dec 15;30(24):3567-74. doi: 10.1093/bioinformatics/btu583. Epub 2014 Aug 31. Bioinformatics. 2014. PMID: 25178460 Free PMC article.
Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline.
Kroll KW, Mokaram NE, Pelletier AR, Frankhouser DE, Westphal MS, Stump PA, Stump CL, Bundschuh R, Blachly JS, Yan P. Kroll KW, et al. Among authors: yan p. Cancer Inform. 2014 Oct 15;13(Suppl 3):7-14. doi: 10.4137/CIN.S14022. eCollection 2014. Cancer Inform. 2014. PMID: 25368506 Free PMC article.
CLEAR: coverage-based limiting-cell experiment analysis for RNA-seq.
Walker LA, Sovic MG, Chiang CL, Hu E, Denninger JK, Chen X, Kirby ED, Byrd JC, Muthusamy N, Bundschuh R, Yan P. Walker LA, et al. Among authors: yan p. J Transl Med. 2020 Feb 10;18(1):63. doi: 10.1186/s12967-020-02247-6. J Transl Med. 2020. PMID: 32039730 Free PMC article.
A Scalable, Flexible Workflow for MethylCap-Seq Data Analysis.
Rodriguez B, Tam HH, Frankhouser D, Trimarchi M, Murphy M, Kuo C, Parikh D, Ball B, Schwind S, Curfman J, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez B, et al. Among authors: yan p. IEEE Int Workshop Genomic Signal Process Stat. 2011:1-4. doi: 10.1109/GENSiPS.2011.6169426. IEEE Int Workshop Genomic Signal Process Stat. 2011. PMID: 22484542 Free PMC article.
3,451 results