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A chromosome-level assembly of the Atlantic herring genome-detection of a supergene and other signals of selection.
Pettersson ME, Rochus CM, Han F, Chen J, Hill J, Wallerman O, Fan G, Hong X, Xu Q, Zhang H, Liu S, Liu X, Haggerty L, Hunt T, Martin FJ, Flicek P, Bunikis I, Folkvord A, Andersson L. Pettersson ME, et al. Among authors: xu q. Genome Res. 2019 Nov;29(11):1919-1928. doi: 10.1101/gr.253435.119. Epub 2019 Oct 24. Genome Res. 2019. PMID: 31649060 Free PMC article.
Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression.
Fan G, Chan J, Ma K, Yang B, Zhang H, Yang X, Shi C, Chun-Hin Law H, Ren Z, Xu Q, Liu Q, Wang J, Chen W, Shao L, Gonçalves D, Ramos A, Cardoso SD, Guo M, Cai J, Xu X, Wang J, Yang H, Liu X, Wang Y. Fan G, et al. Among authors: xu q, xu x. Gigascience. 2018 Nov 1;7(11):giy087. doi: 10.1093/gigascience/giy087. Gigascience. 2018. PMID: 30010754 Free PMC article.
Chromosome level comparative analysis of Brassica genomes.
Wang W, Guan R, Liu X, Zhang H, Song B, Xu Q, Fan G, Chen W, Wu X, Liu X, Wang J. Wang W, et al. Among authors: xu q. Plant Mol Biol. 2019 Feb;99(3):237-249. doi: 10.1007/s11103-018-0814-x. Epub 2019 Jan 10. Plant Mol Biol. 2019. PMID: 30632049
The first chromosome-level genome for a marine mammal as a resource to study ecology and evolution.
Fan G, Zhang Y, Liu X, Wang J, Sun Z, Sun S, Zhang H, Chen J, Lv M, Han K, Tan X, Hu J, Guan R, Fu Y, Liu S, Chen X, Xu Q, Qin Y, Liu L, Bai J, Wang O, Tang J, Lu H, Shang Z, Wang B, Hu G, Zhao X, Zou Y, Chen A, Gong M, Zhang W, Lee SM, Li S, Liu J, Li Z, Lu Y, Sabir JSM, Sabir MJ, Khan M, Hajrah NH, Yin Y, Kristiansen K, Yang H, Wang J, Xu X, Liu X. Fan G, et al. Among authors: xu q, xu x. Mol Ecol Resour. 2019 Jul;19(4):944-956. doi: 10.1111/1755-0998.13003. Epub 2019 May 9. Mol Ecol Resour. 2019. PMID: 30735609
A survey of the sperm whale (Physeter catodon) commensal microbiome.
Li C, Tan X, Bai J, Xu Q, Liu S, Guo W, Yu C, Fan G, Lu Y, Zhang H, Yang H, Chen J, Liu X. Li C, et al. Among authors: xu q. PeerJ. 2019 Jul 4;7:e7257. doi: 10.7717/peerj.7257. eCollection 2019. PeerJ. 2019. PMID: 31309006 Free PMC article.
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil.
Zhao YP, Fan G, Yin PP, Sun S, Li N, Hong X, Hu G, Zhang H, Zhang FM, Han JD, Hao YJ, Xu Q, Yang X, Xia W, Chen W, Lin HY, Zhang R, Chen J, Zheng XM, Lee SM, Lee J, Uehara K, Wang J, Yang H, Fu CX, Liu X, Xu X, Ge S. Zhao YP, et al. Among authors: xu q, xu x. Nat Commun. 2019 Sep 13;10(1):4201. doi: 10.1038/s41467-019-12133-5. Nat Commun. 2019. PMID: 31519986 Free PMC article.
Comparative Plastome Analysis of Root- and Stem-Feeding Parasites of Santalales Untangle the Footprints of Feeding Mode and Lifestyle Transitions.
Chen X, Fang D, Wu C, Liu B, Liu Y, Sahu SK, Song B, Yang S, Yang T, Wei J, Wang X, Zhang W, Xu Q, Wang H, Yuan L, Liao X, Chen L, Chen Z, Yuan F, Chang Y, Lu L, Yang H, Wang J, Xu X, Liu X, Wicke S, Liu H. Chen X, et al. Among authors: xu q, xu x. Genome Biol Evol. 2020 Jan 1;12(1):3663-3676. doi: 10.1093/gbe/evz271. Genome Biol Evol. 2020. PMID: 31845987 Free PMC article.
The Chromosome Level Genome and Genome-wide Association Study for the Agronomic Traits of Panax Notoginseng.
Fan G, Liu X, Sun S, Shi C, Du X, Han K, Yang B, Fu Y, Liu M, Seim I, Zhang H, Xu Q, Wang J, Su X, Shao L, Zhu Y, Shao Y, Zhao Y, Wong AK, Zhuang D, Chen W, Zhang G, Yang H, Xu X, Tsui SK, Liu X, Lee SM. Fan G, et al. Among authors: xu q, xu x. iScience. 2020 Sep 8;23(9):101538. doi: 10.1016/j.isci.2020.101538. eCollection 2020 Sep 25. iScience. 2020. PMID: 33083766 Free PMC article.
The White-Spotted Bamboo Shark Genome Reveals Chromosome Rearrangements and Fast-Evolving Immune Genes of Cartilaginous Fish.
Zhang Y, Gao H, Li H, Guo J, Ouyang B, Wang M, Xu Q, Wang J, Lv M, Guo X, Liu Q, Wei L, Ren H, Xi Y, Guo Y, Ren B, Pan S, Liu C, Ding X, Xiang H, Yu Y, Song Y, Meng L, Liu S, Wang J, Jiang Y, Shi J, Liu S, Sabir JSM, Sabir MJ, Khan M, Hajrah NH, Ming-Yuen Lee S, Xu X, Yang H, Wang J, Fan G, Yang N, Liu X. Zhang Y, et al. Among authors: xu q, xu x. iScience. 2020 Nov 2;23(11):101754. doi: 10.1016/j.isci.2020.101754. eCollection 2020 Nov 20. iScience. 2020. PMID: 33251490 Free PMC article.
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