Xiao X - Search Results

1

A community challenge to predict clinical outcomes after immune checkpoint blockade in non-small cell lung cancer.

Mason M, Lapuente-Santana Ó, Halkola AS, Wang W, Mall R, Xiao X, Kaufman J, Fu J, Pfeil J, Banerjee J, Chung V, Chang H, Chasalow SD, Lin HY, Chai R, Yu T, Finotello F, Mirtti T, Mäyränpää MI, Bao J, Verschuren EW, Ahmed EI, Ceccarelli M, Miller LD, Monaco G, Hendrickx WRL, Sherif S, Yang L, Tang M, Gu SS, Zhang W, Zhang Y, Zeng Z, Das Sahu A, Liu Y, Yang W, Bedognetti D, Tang J, Eduati F, Laajala TD, Geese WJ, Guinney J, Szustakowski JD, Vincent BG, Carbone DP. Mason M, et al. Among authors: xiao x. J Transl Med. 2024 Feb 21;22(1):190. doi: 10.1186/s12967-023-04705-3. J Transl Med. 2024. PMID: 38383458 Free PMC article.

2

Comparison of high-throughput single-cell RNA sequencing data processing pipelines.

Gao M, Ling M, Tang X, Wang S, Xiao X, Qiao Y, Yang W, Yu R. Gao M, et al. Among authors: xiao x. Brief Bioinform. 2021 May 20;22(3):bbaa116. doi: 10.1093/bib/bbaa116. Brief Bioinform. 2021. PMID: 34020539

3

Inconsistent prediction capability of ImmuneCells.Sig across different RNA-seq datasets.

Xiao X, Xu C, Yang W, Yu R. Xiao X, et al. Nat Commun. 2021 Jul 7;12(1):4167. doi: 10.1038/s41467-021-24303-5. Nat Commun. 2021. PMID: 34234113 Free PMC article. No abstract available.

4

Dice-XMBD: Deep Learning-Based Cell Segmentation for Imaging Mass Cytometry.

Xiao X, Qiao Y, Jiao Y, Fu N, Yang W, Wang L, Yu R, Han J. Xiao X, et al. Front Genet. 2021 Sep 15;12:721229. doi: 10.3389/fgene.2021.721229. eCollection 2021. Front Genet. 2021. PMID: 34603385 Free PMC article.

5

Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma.

Xiao X, Guo Q, Cui C, Lin Y, Zhang L, Ding X, Li Q, Wang M, Yang W, Kong Y, Yu R. Xiao X, et al. Commun Med (Lond). 2022 Oct 21;2:131. doi: 10.1038/s43856-022-00197-2. eCollection 2022. Commun Med (Lond). 2022. PMID: 36281356 Free PMC article.

6

DAISM-DNN^XMBD: Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks.

Lin Y, Li H, Xiao X, Zhang L, Wang K, Zhao J, Wang M, Zheng F, Zhang M, Yang W, Han J, Yu R. Lin Y, et al. Among authors: xiao x. Patterns (N Y). 2022 Feb 3;3(3):100440. doi: 10.1016/j.patter.2022.100440. eCollection 2022 Mar 11. Patterns (N Y). 2022. PMID: 35510186 Free PMC article.

7

Protocol to estimate cell type proportions from bulk RNA-seq using DAISM-DNN^XMBD.

Lin Y, Wu S, Xiao X, Zhao J, Wang M, Li H, Wang K, Zhang M, Zheng F, Yang W, Zhang L, Han J, Yu R. Lin Y, et al. Among authors: xiao x. STAR Protoc. 2022 Jul 31;3(3):101587. doi: 10.1016/j.xpro.2022.101587. eCollection 2022 Sep 16. STAR Protoc. 2022. PMID: 35942344 Free PMC article.

8

Identification of SARS-CoV-2-specific T cell and its receptor.

Zhang Q, Liang Q, Zhang R, Wang N, Xiao X, Shao J, Wang K. Zhang Q, et al. Among authors: xiao x. J Hematol Oncol. 2024 Mar 27;17(1):15. doi: 10.1186/s13045-024-01537-6. J Hematol Oncol. 2024. PMID: 38539271 Free PMC article.

9

Mediation of White Matter Alterations in the Association Between Ventricular Dilation and Cognitive Decline in Hydrocephalus Patients: An MRI Study.

Xiao Y, Gui Y, Dai J, Zhao H, Rao Z, Luo D, Deng X, Xiao X. Xiao Y, et al. Among authors: xiao x. J Magn Reson Imaging. 2024 May 20. doi: 10.1002/jmri.29452. Online ahead of print. J Magn Reson Imaging. 2024. PMID: 38767272

10

Engineering miniature CRISPR-Cas Un1Cas12f1 for efficient base editing.

Hu Y, Han L, Mo Q, Du Z, Jiang W, Wu X, Zheng J, Xiao X, Sun Y, Ma H. Hu Y, et al. Among authors: xiao x. Mol Ther Nucleic Acids. 2024 Apr 25;35(2):102201. doi: 10.1016/j.omtn.2024.102201. eCollection 2024 Jun 11. Mol Ther Nucleic Acids. 2024. PMID: 38766526 Free PMC article.

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