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Towards a balanced view of the bacterial tree of life.
Schulz F, Eloe-Fadrosh EA, Bowers RM, Jarett J, Nielsen T, Ivanova NN, Kyrpides NC, Woyke T. Schulz F, et al. Among authors: woyke t. Microbiome. 2017 Oct 17;5(1):140. doi: 10.1186/s40168-017-0360-9. Microbiome. 2017. PMID: 29041958 Free PMC article.
Symbiosis insights through metagenomic analysis of a microbial consortium.
Woyke T, Teeling H, Ivanova NN, Huntemann M, Richter M, Gloeckner FO, Boffelli D, Anderson IJ, Barry KW, Shapiro HJ, Szeto E, Kyrpides NC, Mussmann M, Amann R, Bergin C, Ruehland C, Rubin EM, Dubilier N. Woyke T, et al. Nature. 2006 Oct 26;443(7114):950-5. doi: 10.1038/nature05192. Epub 2006 Sep 17. Nature. 2006. PMID: 16980956
Assembling the marine metagenome, one cell at a time.
Woyke T, Xie G, Copeland A, González JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R. Woyke T, et al. PLoS One. 2009;4(4):e5299. doi: 10.1371/journal.pone.0005299. Epub 2009 Apr 23. PLoS One. 2009. PMID: 19390573 Free PMC article.
One bacterial cell, one complete genome.
Woyke T, Tighe D, Mavromatis K, Clum A, Copeland A, Schackwitz W, Lapidus A, Wu D, McCutcheon JP, McDonald BR, Moran NA, Bristow J, Cheng JF. Woyke T, et al. PLoS One. 2010 Apr 23;5(4):e10314. doi: 10.1371/journal.pone.0010314. PLoS One. 2010. PMID: 20428247 Free PMC article.
Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus.
Blumer-Schuette SE, Ozdemir I, Mistry D, Lucas S, Lapidus A, Cheng JF, Goodwin LA, Pitluck S, Land ML, Hauser LJ, Woyke T, Mikhailova N, Pati A, Kyrpides NC, Ivanova N, Detter JC, Walston-Davenport K, Han S, Adams MW, Kelly RM. Blumer-Schuette SE, et al. Among authors: woyke t. J Bacteriol. 2011 Mar;193(6):1483-4. doi: 10.1128/JB.01515-10. Epub 2011 Jan 7. J Bacteriol. 2011. PMID: 21216991 Free PMC article.
Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7.
Muyzer G, Sorokin DY, Mavromatis K, Lapidus A, Clum A, Ivanova N, Pati A, d'Haeseleer P, Woyke T, Kyrpides NC. Muyzer G, et al. Among authors: woyke t. Stand Genomic Sci. 2011 Feb 14;4(1):23-35. doi: 10.4056/sigs.1483693. Stand Genomic Sci. 2011. PMID: 21475584 Free PMC article.
Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1).
Pitluck S, Sikorski J, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jeffries CD, Detter JC, Brambilla E, Djao OD, Rohde M, Spring S, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Land M. Pitluck S, et al. Among authors: woyke t. Stand Genomic Sci. 2011 Feb 20;4(1):54-62. doi: 10.4056/sigs.1523807. Stand Genomic Sci. 2011. PMID: 21475587 Free PMC article.
Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).
Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Spring S, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC. Han C, et al. Among authors: woyke t. Stand Genomic Sci. 2011 Jul 1;4(3):371-80. doi: 10.4056/sigs.2004684. Stand Genomic Sci. 2011. PMID: 21886864 Free PMC article.
Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).
Göker M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Rohde M, Spring S, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Göker M, et al. Among authors: woyke t. Stand Genomic Sci. 2011 Jul 1;4(3):393-401. doi: 10.4056/sigs.2064705. Epub 2011 Jun 30. Stand Genomic Sci. 2011. PMID: 21886866 Free PMC article.
Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.
Suen G, Stevenson DM, Bruce DC, Chertkov O, Copeland A, Cheng JF, Detter C, Detter JC, Goodwin LA, Han CS, Hauser LJ, Ivanova NN, Kyrpides NC, Land ML, Lapidus A, Lucas S, Ovchinnikova G, Pitluck S, Tapia R, Woyke T, Boyum J, Mead D, Weimer PJ. Suen G, et al. Among authors: woyke t. J Bacteriol. 2011 Oct;193(19):5574-5. doi: 10.1128/JB.05621-11. J Bacteriol. 2011. PMID: 21914885 Free PMC article.
609 results