Wodak SJ - Search Results

1

Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences.

Santos MA, Turinsky AL, Ong S, Tsai J, Berger MF, Badis G, Talukder S, Gehrke AR, Bulyk ML, Hughes TR, Wodak SJ. Santos MA, et al. Among authors: wodak sj. Nucleic Acids Res. 2010 Dec;38(22):7927-42. doi: 10.1093/nar/gkq714. Epub 2010 Aug 12. Nucleic Acids Res. 2010. PMID: 20705649 Free PMC article.

2

DAnCER: disease-annotated chromatin epigenetics resource.

Turinsky AL, Turner B, Borja RC, Gleeson JA, Heath M, Pu S, Switzer T, Dong D, Gong Y, On T, Xiong X, Emili A, Greenblatt J, Parkinson J, Zhang Z, Wodak SJ. Turinsky AL, et al. Among authors: wodak sj. Nucleic Acids Res. 2011 Jan;39(Database issue):D889-94. doi: 10.1093/nar/gkq857. Epub 2010 Sep 28. Nucleic Acids Res. 2011. PMID: 20876685 Free PMC article.

3

Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human.

Pu S, Turinsky AL, Vlasblom J, On T, Xiong X, Emili A, Zhang Z, Greenblatt J, Parkinson J, Wodak SJ. Pu S, et al. Among authors: wodak sj. PLoS One. 2010 Nov 29;5(11):e14122. doi: 10.1371/journal.pone.0014122. PLoS One. 2010. PMID: 21124763 Free PMC article.

4

Literature curation of protein interactions: measuring agreement across major public databases.

Turinsky AL, Razick S, Turner B, Donaldson IM, Wodak SJ. Turinsky AL, et al. Among authors: wodak sj. Database (Oxford). 2010 Dec 22;2010:baq026. doi: 10.1093/database/baq026. Print 2010. Database (Oxford). 2010. PMID: 21183497 Free PMC article.

5

Protein-protein interaction networks: the puzzling riches.

Wodak SJ, Vlasblom J, Turinsky AL, Pu S. Wodak SJ, et al. Curr Opin Struct Biol. 2013 Dec;23(6):941-53. doi: 10.1016/j.sbi.2013.08.002. Epub 2013 Sep 2. Curr Opin Struct Biol. 2013. PMID: 24007795 Review.

6

iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.

Turner B, Razick S, Turinsky AL, Vlasblom J, Crowdy EK, Cho E, Morrison K, Donaldson IM, Wodak SJ. Turner B, et al. Among authors: wodak sj. Database (Oxford). 2010 Oct 12;2010:baq023. doi: 10.1093/database/baq023. Database (Oxford). 2010. PMID: 20940177 Free PMC article.

7

OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.

Hao Y, Merkoulovitch A, Vlasblom J, Pu S, Turinsky AL, Roudeva D, Turner B, Greenblatt J, Wodak SJ. Hao Y, et al. Among authors: wodak sj. Bioinformatics. 2011 Mar 15;27(6):883-4. doi: 10.1093/bioinformatics/btr035. Epub 2011 Jan 20. Bioinformatics. 2011. PMID: 21257609 Free PMC article.

8

Navigating the global protein-protein interaction landscape using iRefWeb.

Turinsky AL, Razick S, Turner B, Donaldson IM, Wodak SJ. Turinsky AL, et al. Among authors: wodak sj. Methods Mol Biol. 2014;1091:315-31. doi: 10.1007/978-1-62703-691-7_22. Methods Mol Biol. 2014. PMID: 24203342

9

Multilocus loss of DNA methylation in individuals with mutations in the histone H3 lysine 4 demethylase KDM5C.

Grafodatskaya D, Chung BH, Butcher DT, Turinsky AL, Goodman SJ, Choufani S, Chen YA, Lou Y, Zhao C, Rajendram R, Abidi FE, Skinner C, Stavropoulos J, Bondy CA, Hamilton J, Wodak S, Scherer SW, Schwartz CE, Weksberg R. Grafodatskaya D, et al. Among authors: wodak s. BMC Med Genomics. 2013 Jan 28;6:1. doi: 10.1186/1755-8794-6-1. BMC Med Genomics. 2013. PMID: 23356856 Free PMC article.

10

The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses.

On T, Xiong X, Pu S, Turinsky A, Gong Y, Emili A, Zhang Z, Greenblatt J, Wodak SJ, Parkinson J. On T, et al. Among authors: wodak sj. Proteins. 2010 Jul;78(9):2075-89. doi: 10.1002/prot.22723. Proteins. 2010. PMID: 20455264

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