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EnzymeML: seamless data flow and modeling of enzymatic data.
Lauterbach S, Dienhart H, Range J, Malzacher S, Spöring JD, Rother D, Pinto MF, Martins P, Lagerman CE, Bommarius AS, Høst AV, Woodley JM, Ngubane S, Kudanga T, Bergmann FT, Rohwer JM, Iglezakis D, Weidemann A, Wittig U, Kettner C, Swainston N, Schnell S, Pleiss J. Lauterbach S, et al. Among authors: wittig u. Nat Methods. 2023 Mar;20(3):400-402. doi: 10.1038/s41592-022-01763-1. Epub 2023 Feb 9. Nat Methods. 2023. PMID: 36759590
Storing and annotating of kinetic data.
Rojas I, Golebiewski M, Kania R, Krebs O, Mir S, Weidemann A, Wittig U. Rojas I, et al. Among authors: wittig u. In Silico Biol. 2007;7(2 Suppl):S37-44. In Silico Biol. 2007. PMID: 17822389
Enzyme kinetics informatics: from instrument to browser.
Swainston N, Golebiewski M, Messiha HL, Malys N, Kania R, Kengne S, Krebs O, Mir S, Sauer-Danzwith H, Smallbone K, Weidemann A, Wittig U, Kell DB, Mendes P, Müller W, Paton NW, Rojas I. Swainston N, et al. Among authors: wittig u. FEBS J. 2010 Sep;277(18):3769-79. doi: 10.1111/j.1742-4658.2010.07778.x. Epub 2010 Aug 3. FEBS J. 2010. PMID: 20738395 Free article.
Challenges for an enzymatic reaction kinetics database.
Wittig U, Rey M, Kania R, Bittkowski M, Shi L, Golebiewski M, Weidemann A, Müller W, Rojas I. Wittig U, et al. FEBS J. 2014 Jan;281(2):572-82. doi: 10.1111/febs.12562. Epub 2013 Oct 25. FEBS J. 2014. PMID: 24165050 Free article. Review.
STRENDA DB: enabling the validation and sharing of enzyme kinetics data.
Swainston N, Baici A, Bakker BM, Cornish-Bowden A, Fitzpatrick PF, Halling P, Leyh TS, O'Donovan C, Raushel FM, Reschel U, Rohwer JM, Schnell S, Schomburg D, Tipton KF, Tsai MD, Westerhoff HV, Wittig U, Wohlgemuth R, Kettner C. Swainston N, et al. Among authors: wittig u. FEBS J. 2018 Jun;285(12):2193-2204. doi: 10.1111/febs.14427. Epub 2018 Mar 23. FEBS J. 2018. PMID: 29498804 Free PMC article.
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
EnzymeML-a data exchange format for biocatalysis and enzymology.
Range J, Halupczok C, Lohmann J, Swainston N, Kettner C, Bergmann FT, Weidemann A, Wittig U, Schnell S, Pleiss J. Range J, et al. Among authors: wittig u. FEBS J. 2022 Oct;289(19):5864-5874. doi: 10.1111/febs.16318. Epub 2021 Dec 26. FEBS J. 2022. PMID: 34890097 Free article. Review.
57 results