Wilmes P - Search Results

1

A toolbox of machine learning software to support microbiome analysis.

Marcos-Zambrano LJ, López-Molina VM, Bakir-Gungor B, Frohme M, Karaduzovic-Hadziabdic K, Klammsteiner T, Ibrahimi E, Lahti L, Loncar-Turukalo T, Dhamo X, Simeon A, Nechyporenko A, Pio G, Przymus P, Sampri A, Trajkovik V, Lacruz-Pleguezuelos B, Aasmets O, Araujo R, Anagnostopoulos I, Aydemir Ö, Berland M, Calle ML, Ceci M, Duman H, Gündoğdu A, Havulinna AS, Kaka Bra KHN, Kalluci E, Karav S, Lode D, Lopes MB, May P, Nap B, Nedyalkova M, Paciência I, Pasic L, Pujolassos M, Shigdel R, Susín A, Thiele I, Truică CO, Wilmes P, Yilmaz E, Yousef M, Claesson MJ, Truu J, Carrillo de Santa Pau E. Marcos-Zambrano LJ, et al. Among authors: wilmes p. Front Microbiol. 2023 Nov 22;14:1250806. doi: 10.3389/fmicb.2023.1250806. eCollection 2023. Front Microbiol. 2023. PMID: 38075858 Free PMC article. Review.

2

Condensing the omics fog of microbial communities.

Muller EE, Glaab E, May P, Vlassis N, Wilmes P. Muller EE, et al. Among authors: wilmes p. Trends Microbiol. 2013 Jul;21(7):325-33. doi: 10.1016/j.tim.2013.04.009. Epub 2013 Jun 10. Trends Microbiol. 2013. PMID: 23764387

3

A hundred years of activated sludge: time for a rethink.

Sheik AR, Muller EE, Wilmes P. Sheik AR, et al. Among authors: wilmes p. Front Microbiol. 2014 Mar 3;5:47. doi: 10.3389/fmicb.2014.00047. eCollection 2014. Front Microbiol. 2014. PMID: 24624120 Free PMC article.

4

Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires.

Bauer E, Laczny CC, Magnusdottir S, Wilmes P, Thiele I. Bauer E, et al. Among authors: wilmes p. Microbiome. 2015 Nov 30;3:55. doi: 10.1186/s40168-015-0121-6. Microbiome. 2015. PMID: 26617277 Free PMC article.

5

Erratum to: Phenotypic differentiation of gastrointestinal microbes is reflected in their encoded metabolic repertoires.

Bauer E, Laczny CC, Magnusdottir S, Wilmes P, Thiele I. Bauer E, et al. Among authors: wilmes p. Microbiome. 2016 Jul 4;4(1):35. doi: 10.1186/s40168-016-0180-3. Microbiome. 2016. PMID: 27377779 Free PMC article. No abstract available.

6

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract.

Laczny CC, Muller EE, Heintz-Buschart A, Herold M, Lebrun LA, Hogan A, May P, de Beaufort C, Wilmes P. Laczny CC, et al. Among authors: wilmes p. Front Microbiol. 2016 Jun 21;7:884. doi: 10.3389/fmicb.2016.00884. eCollection 2016. Front Microbiol. 2016. PMID: 27445992 Free PMC article.

7

Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes.

Heintz-Buschart A, May P, Laczny CC, Lebrun LA, Bellora C, Krishna A, Wampach L, Schneider JG, Hogan A, de Beaufort C, Wilmes P. Heintz-Buschart A, et al. Among authors: wilmes p. Nat Microbiol. 2016 Oct 10;2:16180. doi: 10.1038/nmicrobiol.2016.180. Nat Microbiol. 2016. PMID: 27723761

8

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota.

Magnúsdóttir S, Heinken A, Kutt L, Ravcheev DA, Bauer E, Noronha A, Greenhalgh K, Jäger C, Baginska J, Wilmes P, Fleming RM, Thiele I. Magnúsdóttir S, et al. Among authors: wilmes p. Nat Biotechnol. 2017 Jan;35(1):81-89. doi: 10.1038/nbt.3703. Epub 2016 Nov 28. Nat Biotechnol. 2017. PMID: 27893703

9

The RNA Complement of Outer Membrane Vesicles From Salmonella enterica Serovar Typhimurium Under Distinct Culture Conditions.

Malabirade A, Habier J, Heintz-Buschart A, May P, Godet J, Halder R, Etheridge A, Galas D, Wilmes P, Fritz JV. Malabirade A, et al. Among authors: wilmes p. Front Microbiol. 2018 Aug 30;9:2015. doi: 10.3389/fmicb.2018.02015. eCollection 2018. Front Microbiol. 2018. PMID: 30214435 Free PMC article.

10

Unification of functional annotation descriptions using text mining.

Queirós P, Novikova P, Wilmes P, May P. Queirós P, et al. Among authors: wilmes p. Biol Chem. 2021 May 13;402(8):983-990. doi: 10.1515/hsz-2021-0125. Print 2021 Jul 27. Biol Chem. 2021. PMID: 33984880 Free article.

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