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SWISS-MODEL: homology modelling of protein structures and complexes.
Waterhouse A, Bertoni M, Bienert S, Studer G, Tauriello G, Gumienny R, Heer FT, de Beer TAP, Rempfer C, Bordoli L, Lepore R, Schwede T. Waterhouse A, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W296-W303. doi: 10.1093/nar/gky427. Nucleic Acids Res. 2018. PMID: 29788355 Free PMC article.
The SWISS-MODEL Repository-new features and functionality.
Bienert S, Waterhouse A, de Beer TA, Tauriello G, Studer G, Bordoli L, Schwede T. Bienert S, et al. Among authors: waterhouse a. Nucleic Acids Res. 2017 Jan 4;45(D1):D313-D319. doi: 10.1093/nar/gkw1132. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27899672 Free PMC article.
QMEANDisCo-distance constraints applied on model quality estimation.
Studer G, Rempfer C, Waterhouse AM, Gumienny R, Haas J, Schwede T. Studer G, et al. Bioinformatics. 2020 Apr 15;36(8):2647. doi: 10.1093/bioinformatics/btaa058. Bioinformatics. 2020. PMID: 32048708 Free PMC article. No abstract available.
A Comprehensive Mapping of the Druggable Cavities within the SARS-CoV-2 Therapeutically Relevant Proteins by Combining Pocket and Docking Searches as Implemented in Pockets 2.0.
Gervasoni S, Vistoli G, Talarico C, Manelfi C, Beccari AR, Studer G, Tauriello G, Waterhouse AM, Schwede T, Pedretti A. Gervasoni S, et al. Among authors: waterhouse am. Int J Mol Sci. 2020 Jul 21;21(14):5152. doi: 10.3390/ijms21145152. Int J Mol Sci. 2020. PMID: 32708196 Free PMC article.
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources.
Varadi M, Nair S, Sillitoe I, Tauriello G, Anyango S, Bienert S, Borges C, Deshpande M, Green T, Hassabis D, Hatos A, Hegedus T, Hekkelman ML, Joosten R, Jumper J, Laydon A, Molodenskiy D, Piovesan D, Salladini E, Salzberg SL, Sommer MJ, Steinegger M, Suhajda E, Svergun D, Tenorio-Ku L, Tosatto S, Tunyasuvunakool K, Waterhouse AM, Žídek A, Schwede T, Orengo C, Velankar S. Varadi M, et al. Among authors: waterhouse am. Gigascience. 2022 Nov 30;11:giac118. doi: 10.1093/gigascience/giac118. Gigascience. 2022. PMID: 36448847 Free PMC article.
202 results