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RResolver: efficient short-read repeat resolution within ABySS.
Nikolić V, Afshinfard A, Chu J, Wong J, Coombe L, Nip KM, Warren RL, Birol I. Nikolić V, et al. Among authors: warren rl. BMC Bioinformatics. 2022 Jun 21;23(1):246. doi: 10.1186/s12859-022-04790-z. BMC Bioinformatics. 2022. PMID: 35729491 Free PMC article.
THOR: targeted high-throughput ortholog reconstructor.
Bainbridge MN, Warren RL, He A, Bilenky M, Robertson AG, Jones SJ. Bainbridge MN, et al. Among authors: warren rl. Bioinformatics. 2007 Oct 1;23(19):2622-4. doi: 10.1093/bioinformatics/btl513. Epub 2006 Oct 11. Bioinformatics. 2007. PMID: 17038343
Assembling millions of short DNA sequences using SSAKE.
Warren RL, Sutton GG, Jones SJ, Holt RA. Warren RL, et al. Bioinformatics. 2007 Feb 15;23(4):500-1. doi: 10.1093/bioinformatics/btl629. Epub 2006 Dec 8. Bioinformatics. 2007. PMID: 17158514 Free PMC article.
Profiling model T-cell metagenomes with short reads.
Warren RL, Nelson BH, Holt RA. Warren RL, et al. Bioinformatics. 2009 Feb 15;25(4):458-64. doi: 10.1093/bioinformatics/btp010. Epub 2009 Jan 9. Bioinformatics. 2009. PMID: 19136549
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.
Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H, Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D, Nelson DR, Ritland C, Isabel N, Jaquish B, Yanchuk A, Bousquet J, Jones SJ, MacKay J, Birol I, Bohlmann J. Warren RL, et al. Plant J. 2015 Jul;83(2):189-212. doi: 10.1111/tpj.12886. Epub 2015 Jun 19. Plant J. 2015. PMID: 26017574 Free article.
Konnector v2.0: pseudo-long reads from paired-end sequencing data.
Vandervalk BP, Yang C, Xue Z, Raghavan K, Chu J, Mohamadi H, Jackman SD, Chiu R, Warren RL, Birol I. Vandervalk BP, et al. Among authors: warren rl. BMC Med Genomics. 2015;8 Suppl 3(Suppl 3):S1. doi: 10.1186/1755-8794-8-S3-S1. Epub 2015 Sep 23. BMC Med Genomics. 2015. PMID: 26399504 Free PMC article.
Spaced Seed Data Structures for De Novo Assembly.
Birol I, Chu J, Mohamadi H, Jackman SD, Raghavan K, Vandervalk BP, Raymond A, Warren RL. Birol I, et al. Among authors: warren rl. Int J Genomics. 2015;2015:196591. doi: 10.1155/2015/196591. Epub 2015 Oct 11. Int J Genomics. 2015. PMID: 26539459 Free PMC article.
Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation.
Jackman SD, Warren RL, Gibb EA, Vandervalk BP, Mohamadi H, Chu J, Raymond A, Pleasance S, Coope R, Wildung MR, Ritland CE, Bousquet J, Jones SJ, Bohlmann J, Birol I. Jackman SD, et al. Among authors: warren rl. Genome Biol Evol. 2015 Dec 8;8(1):29-41. doi: 10.1093/gbe/evv244. Genome Biol Evol. 2015. PMID: 26645680 Free PMC article.
194 results