Wang K - Search Results

1

Synthetic lethality-mediated precision oncology via the tumor transcriptome.

Lee JS, Nair NU, Dinstag G, Chapman L, Chung Y, Wang K, Sinha S, Cha H, Kim D, Schperberg AV, Srinivasan A, Lazar V, Rubin E, Hwang S, Berger R, Beker T, Ronai Z, Hannenhalli S, Gilbert MR, Kurzrock R, Lee SH, Aldape K, Ruppin E. Lee JS, et al. Among authors: wang k. Cell. 2021 Apr 29;184(9):2487-2502.e13. doi: 10.1016/j.cell.2021.03.030. Epub 2021 Apr 14. Cell. 2021. PMID: 33857424 Free PMC article.

2

Chromatin and Genomic determinants of alternative splicing.

Wang K, Cao K, Hannenhalli S. Wang K, et al. ACM BCB. 2015 Sep;2015:345-354. doi: 10.1145/2808719.2808755. ACM BCB. 2015. PMID: 28825057 Free PMC article.

3

Prediction and Subtyping of Hypertension from Pan-Tissue Transcriptomic and Genetic Analyses.

Basu M, Sharmin M, Das A, Nair NU, Wang K, Lee JS, Chang YC, Ruppin E, Hannenhalli S. Basu M, et al. Among authors: wang k. Genetics. 2017 Nov;207(3):1121-1134. doi: 10.1534/genetics.117.300280. Epub 2017 Sep 12. Genetics. 2017. PMID: 28899996 Free PMC article.

4

Comprehensive map of age-associated splicing changes across human tissues and their contributions to age-associated diseases.

Wang K, Wu D, Zhang H, Das A, Basu M, Malin J, Cao K, Hannenhalli S. Wang K, et al. Sci Rep. 2018 Jul 19;8(1):10929. doi: 10.1038/s41598-018-29086-2. Sci Rep. 2018. PMID: 30026530 Free PMC article.

5

A transcription-centric model of SNP-age interaction.

Wang K, Basu M, Malin J, Hannenhalli S. Wang K, et al. PLoS Genet. 2021 Mar 26;17(3):e1009427. doi: 10.1371/journal.pgen.1009427. eCollection 2021 Mar. PLoS Genet. 2021. PMID: 33770080 Free PMC article.

6

Predicting tissue-specific gene expression from whole blood transcriptome.

Basu M, Wang K, Ruppin E, Hannenhalli S. Basu M, et al. Among authors: wang k. Sci Adv. 2021 Apr 2;7(14):eabd6991. doi: 10.1126/sciadv.abd6991. Print 2021 Apr. Sci Adv. 2021. PMID: 33811070 Free PMC article.

7

Deconvolving Clinically Relevant Cellular Immune Cross-talk from Bulk Gene Expression Using CODEFACS and LIRICS Stratifies Patients with Melanoma to Anti-PD-1 Therapy.

Wang K, Patkar S, Lee JS, Gertz EM, Robinson W, Schischlik F, Crawford DR, Schäffer AA, Ruppin E. Wang K, et al. Cancer Discov. 2022 Apr 1;12(4):1088-1105. doi: 10.1158/2159-8290.CD-21-0887. Cancer Discov. 2022. PMID: 34983745 Free PMC article.

8

Ubiquitin Ligases Siah1a/2 Control Alveolar Macrophage Functions to Limit Carcinogen-Induced Lung Adenocarcinoma.

Scortegagna M, Du Y, Bradley LM, Wang K, Molinolo A, Ruppin E, Murad R, Ronai ZA. Scortegagna M, et al. Among authors: wang k. Cancer Res. 2023 Jun 15;83(12):2016-2033. doi: 10.1158/0008-5472.CAN-23-0258. Cancer Res. 2023. PMID: 37078793 Free PMC article.

9

Phenotype-Dependent Coexpression Gene Clusters: Application to Normal and Premature Ageing.

Wang K, Das A, Xiong ZM, Cao K, Hannenhalli S. Wang K, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 Jan-Feb;12(1):30-9. doi: 10.1109/TCBB.2014.2359446. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357076 Free PMC article.

10

Transcriptomic Profiling of Plasma Extracellular Vesicles Enables Reliable Annotation of the Cancer-specific Transcriptome and Molecular Subtype.

Bahrambeigi V, Lee JJ, Branchi V, Rajapakshe KI, Xu Z, Kui N, Henry JT, Wang K, Stephens BM, Dhebat S, Hurd MW, Sun R, Yang P, Ruppin E, Wang W, Kopetz S, Maitra A, Guerrero PA. Bahrambeigi V, et al. Among authors: wang w, wang k. Cancer Res. 2024 Mar 7. doi: 10.1158/0008-5472.CAN-23-4070. Online ahead of print. Cancer Res. 2024. PMID: 38451249

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