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Integrative genome-scale analyses reveal post-transcriptional signatures of early human small intestinal development in a directed differentiation organoid model.
BMC Genomics. 2023 Oct 26;24(1):641. doi: 10.1186/s12864-023-09743-1.
BMC Genomics. 2023.
PMID: 37884859
Free PMC article.
miRquant 2.0: an Expanded Tool for Accurate Annotation and Quantification of MicroRNAs and their isomiRs from Small RNA-Sequencing Data.
Kanke M, Baran-Gale J, Villanueva J, Sethupathy P.
Kanke M, et al.
J Integr Bioinform. 2016 Dec 22;13(5):307. doi: 10.2390/biecoll-jib-2016-307.
J Integr Bioinform. 2016.
PMID: 28187421
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Comprehensive microRNA analysis across genome-edited colorectal cancer organoid models reveals miR-24 as a candidate regulator of cell survival.
Villanueva JW, Kwong L, Han T, Martinez SA, Shanahan MT, Kanke M, Dow LE, Danko CG, Sethupathy P.
Villanueva JW, et al.
BMC Genomics. 2022 Dec 1;23(1):792. doi: 10.1186/s12864-022-09018-1.
BMC Genomics. 2022.
PMID: 36457077
Free PMC article.
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Aberrant miR-29 is a predictive feature of severe phenotypes in pediatric Crohn's disease.
Shumway AJ, Shanahan MT, Hollville E, Chen K, Beasley C, Villanueva JW, Albert S, Lian G, Cure MR, Schaner M, Zhu LC, Bantumilli S, Deshmukh M, Furey TS, Sheikh SZ, Sethupathy P.
Shumway AJ, et al. Among authors: villanueva jw.
JCI Insight. 2024 Feb 22;9(4):e168800. doi: 10.1172/jci.insight.168800.
JCI Insight. 2024.
PMID: 38385744
Free PMC article.
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