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Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study.
Wagner SJ, Reisenbüchler D, West NP, Niehues JM, Zhu J, Foersch S, Veldhuizen GP, Quirke P, Grabsch HI, van den Brandt PA, Hutchins GGA, Richman SD, Yuan T, Langer R, Jenniskens JCA, Offermans K, Mueller W, Gray R, Gruber SB, Greenson JK, Rennert G, Bonner JD, Schmolze D, Jonnagaddala J, Hawkins NJ, Ward RL, Morton D, Seymour M, Magill L, Nowak M, Hay J, Koelzer VH, Church DN; TransSCOT consortium; Matek C, Geppert C, Peng C, Zhi C, Ouyang X, James JA, Loughrey MB, Salto-Tellez M, Brenner H, Hoffmeister M, Truhn D, Schnabel JA, Boxberg M, Peng T, Kather JN. Wagner SJ, et al. Among authors: veldhuizen gp. Cancer Cell. 2023 Sep 11;41(9):1650-1661.e4. doi: 10.1016/j.ccell.2023.08.002. Epub 2023 Aug 30. Cancer Cell. 2023. PMID: 37652006 Free PMC article.
Adversarial attacks and adversarial robustness in computational pathology.
Ghaffari Laleh N, Truhn D, Veldhuizen GP, Han T, van Treeck M, Buelow RD, Langer R, Dislich B, Boor P, Schulz V, Kather JN. Ghaffari Laleh N, et al. Among authors: veldhuizen gp. Nat Commun. 2022 Sep 29;13(1):5711. doi: 10.1038/s41467-022-33266-0. Nat Commun. 2022. PMID: 36175413 Free PMC article.
Direct prediction of genetic aberrations from pathology images in gastric cancer with swarm learning.
Saldanha OL, Muti HS, Grabsch HI, Langer R, Dislich B, Kohlruss M, Keller G, van Treeck M, Hewitt KJ, Kolbinger FR, Veldhuizen GP, Boor P, Foersch S, Truhn D, Kather JN. Saldanha OL, et al. Among authors: veldhuizen gp. Gastric Cancer. 2023 Mar;26(2):264-274. doi: 10.1007/s10120-022-01347-0. Epub 2022 Oct 20. Gastric Cancer. 2023. PMID: 36264524 Free PMC article.
Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning: A retrospective multi-centric study.
Niehues JM, Quirke P, West NP, Grabsch HI, van Treeck M, Schirris Y, Veldhuizen GP, Hutchins GGA, Richman SD, Foersch S, Brinker TJ, Fukuoka J, Bychkov A, Uegami W, Truhn D, Brenner H, Brobeil A, Hoffmeister M, Kather JN. Niehues JM, et al. Among authors: veldhuizen gp. Cell Rep Med. 2023 Apr 18;4(4):100980. doi: 10.1016/j.xcrm.2023.100980. Epub 2023 Mar 22. Cell Rep Med. 2023. PMID: 36958327 Free PMC article.
The future landscape of large language models in medicine.
Clusmann J, Kolbinger FR, Muti HS, Carrero ZI, Eckardt JN, Laleh NG, Löffler CML, Schwarzkopf SC, Unger M, Veldhuizen GP, Wagner SJ, Kather JN. Clusmann J, et al. Among authors: veldhuizen gp. Commun Med (Lond). 2023 Oct 10;3(1):141. doi: 10.1038/s43856-023-00370-1. Commun Med (Lond). 2023. PMID: 37816837 Free PMC article. Review.
Using histopathology latent diffusion models as privacy-preserving dataset augmenters improves downstream classification performance.
Niehues JM, Müller-Franzes G, Schirris Y, Wagner SJ, Jendrusch M, Kloor M, Pearson AT, Muti HS, Hewitt KJ, Veldhuizen GP, Zigutyte L, Truhn D, Kather JN. Niehues JM, et al. Among authors: veldhuizen gp. Comput Biol Med. 2024 Jun;175:108410. doi: 10.1016/j.compbiomed.2024.108410. Epub 2024 Apr 4. Comput Biol Med. 2024. PMID: 38678938
Direct image to subtype prediction for brain tumors using deep learning.
Hewitt KJ, Löffler CML, Muti HS, Berghoff AS, Eisenlöffel C, van Treeck M, Carrero ZI, El Nahhas OSM, Veldhuizen GP, Weil S, Saldanha OL, Bejan L, Millner TO, Brandner S, Brückmann S, Kather JN. Hewitt KJ, et al. Among authors: veldhuizen gp. Neurooncol Adv. 2023 Nov 1;5(1):vdad139. doi: 10.1093/noajnl/vdad139. eCollection 2023 Jan-Dec. Neurooncol Adv. 2023. PMID: 38106649 Free PMC article.
17 results