Vanneste K - Search Results

1

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies.

Buytaers FE, Saltykova A, Denayer S, Verhaegen B, Vanneste K, Roosens NHC, Piérard D, Marchal K, De Keersmaecker SCJ. Buytaers FE, et al. Among authors: vanneste k. Front Microbiol. 2021 Nov 5;12:738284. doi: 10.3389/fmicb.2021.738284. eCollection 2021. Front Microbiol. 2021. PMID: 34803953 Free PMC article.

2

Detection of Plasmid-Mediated Colistin Resistance, mcr-1 and mcr-2 Genes, in Salmonella spp. Isolated from Food at Retail in Belgium from 2012 to 2015.

Garcia-Graells C, De Keersmaecker SCJ, Vanneste K, Pochet B, Vermeersch K, Roosens N, Dierick K, Botteldoorn N. Garcia-Graells C, et al. Among authors: vanneste k. Foodborne Pathog Dis. 2018 Feb;15(2):114-117. doi: 10.1089/fpd.2017.2329. Epub 2017 Nov 28. Foodborne Pathog Dis. 2018. PMID: 29182477

3

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO.

Fraiture MA, Saltykova A, Hoffman S, Winand R, Deforce D, Vanneste K, De Keersmaecker SCJ, Roosens NHC. Fraiture MA, et al. Among authors: vanneste k. Sci Rep. 2018 May 21;8(1):7903. doi: 10.1038/s41598-018-26259-x. Sci Rep. 2018. PMID: 29785005 Free PMC article.

4

Application of whole genome data for in silico evaluation of primers and probes routinely employed for the detection of viral species by RT-qPCR using dengue virus as a case study.

Vanneste K, Garlant L, Broeders S, Van Gucht S, Roosens NH. Vanneste K, et al. BMC Bioinformatics. 2018 Sep 4;19(1):312. doi: 10.1186/s12859-018-2313-0. BMC Bioinformatics. 2018. PMID: 30180800 Free PMC article.

5

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept.

Bogaerts B, Winand R, Fu Q, Van Braekel J, Ceyssens PJ, Mattheus W, Bertrand S, De Keersmaecker SCJ, Roosens NHC, Vanneste K. Bogaerts B, et al. Among authors: vanneste k. Front Microbiol. 2019 Mar 6;10:362. doi: 10.3389/fmicb.2019.00362. eCollection 2019. Front Microbiol. 2019. PMID: 30894839 Free PMC article.

6

Shifting national surveillance of Shigella infections toward geno-serotyping by the development of a tailored Luminex assay and NGS workflow.

Ventola E, Bogaerts B, De Keersmaecker SCJ, Vanneste K, Roosens NHC, Mattheus W, Ceyssens PJ. Ventola E, et al. Among authors: vanneste k. Microbiologyopen. 2019 Aug;8(8):e00807. doi: 10.1002/mbo3.807. Epub 2019 Mar 28. Microbiologyopen. 2019. PMID: 30924299 Free PMC article.

7

Whole-Genome Sequencing of Multidrug-Resistant Escherichia coli Strains Harboring the mcr-1 Gene, Isolated from Seawater of the Algiers Coast in Algeria.

Berrazeg M, Deriet A, De Keersmaecker SCJ, Verhaegen B, Vanneste K, Botteldoorn N, Roosens NHC, Mouffok F, Drali R. Berrazeg M, et al. Among authors: vanneste k. Microbiol Resour Announc. 2019 Aug 22;8(34):e00638-19. doi: 10.1128/MRA.00638-19. Microbiol Resour Announc. 2019. PMID: 31439693 Free PMC article.

8

Whole-Genome Sequencing of Six Strains of Salmonella enterica Isolated from Imported Meat in Algeria.

Deriet A, Berrazeg M, De Keersmaecker SCJ, Botteldoorn N, Vanneste K, Verhaegen B, Roosens NHC, Mouffok F, Drali R. Deriet A, et al. Among authors: vanneste k. Microbiol Resour Announc. 2019 Aug 29;8(35):e00615-19. doi: 10.1128/MRA.00615-19. Microbiol Resour Announc. 2019. PMID: 31467095 Free PMC article.

9

Strategy for the identification of micro-organisms producing food and feed products: Bacteria producing food enzymes as study case.

Deckers M, Vanneste K, Winand R, Keersmaecker SCJ, Denayer S, Heyndrickx M, Deforce D, Fraiture MA, Roosens NHC. Deckers M, et al. Among authors: vanneste k. Food Chem. 2020 Feb 1;305:125431. doi: 10.1016/j.foodchem.2019.125431. Epub 2019 Sep 4. Food Chem. 2020. PMID: 31610425

10

TARGETING THE 16S RRNA GENE FOR BACTERIAL IDENTIFICATION IN COMPLEX MIXED SAMPLES: COMPARATIVE EVALUATION OF SECOND (ILLUMINA) AND THIRD (OXFORD NANOPORE TECHNOLOGIES) GENERATION SEQUENCING TECHNOLOGIES.

Winand R, Bogaerts B, Hoffman S, Lefevre L, Delvoye M, Braekel JV, Fu Q, Roosens NH, Keersmaecker SC, Vanneste K. Winand R, et al. Among authors: vanneste k. Int J Mol Sci. 2019 Dec 31;21(1):298. doi: 10.3390/ijms21010298. Int J Mol Sci. 2019. PMID: 31906254 Free PMC article.

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