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Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes.
Gand M, Navickaite I, Bartsch LJ, Grützke J, Overballe-Petersen S, Rasmussen A, Otani S, Michelacci V, Matamoros BR, González-Zorn B, Brouwer MSM, Di Marcantonio L, Bloemen B, Vanneste K, Roosens NHCJ, AbuOun M, De Keersmaecker SCJ. Gand M, et al. Among authors: vanneste k. Front Microbiol. 2024 Apr 4;15:1336532. doi: 10.3389/fmicb.2024.1336532. eCollection 2024. Front Microbiol. 2024. PMID: 38659981 Free PMC article.
Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling.
Buytaers FE, Verhaegen B, Van Nieuwenhuysen T, Roosens NHC, Vanneste K, Marchal K, De Keersmaecker SCJ. Buytaers FE, et al. Among authors: vanneste k. Front Microbiol. 2024 Mar 1;15:1330814. doi: 10.3389/fmicb.2024.1330814. eCollection 2024. Front Microbiol. 2024. PMID: 38495515 Free PMC article.
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
Bogaerts B, Van den Bossche A, Verhaegen B, Delbrassinne L, Mattheus W, Nouws S, Godfroid M, Hoffman S, Roosens NHC, De Keersmaecker SCJ, Vanneste K. Bogaerts B, et al. Among authors: vanneste k. J Clin Microbiol. 2024 May 8;62(5):e0157623. doi: 10.1128/jcm.01576-23. Epub 2024 Mar 5. J Clin Microbiol. 2024. PMID: 38441926 Free PMC article.
Pilot market surveillance of GMM contaminations in alpha-amylase food enzyme products: A detection strategy strengthened by a newly developed qPCR method targeting a GM Bacillus licheniformis producing alpha-amylase.
Fraiture MA, Gobbo A, Guillitte C, Marchesi U, Verginelli D, De Greve J, D'aes J, Vanneste K, Papazova N, Roosens NHC. Fraiture MA, et al. Among authors: vanneste k. Food Chem (Oxf). 2023 Dec 6;8:100186. doi: 10.1016/j.fochms.2023.100186. eCollection 2024 Jul 30. Food Chem (Oxf). 2023. PMID: 38179151 Free PMC article.
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing.
Bogaerts B, Fraiture MA, Huwaert A, Van Nieuwenhuysen T, Jacobs B, Van Hoorde K, De Keersmaecker SCJ, Roosens NHC, Vanneste K. Bogaerts B, et al. Among authors: vanneste k. Front Microbiol. 2023 Jun 21;14:1173594. doi: 10.3389/fmicb.2023.1173594. eCollection 2023. Front Microbiol. 2023. PMID: 37415815 Free PMC article.
85 results