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CheNER: chemical named entity recognizer.
Usié A, Alves R, Solsona F, Vázquez M, Valencia A. Usié A, et al. Among authors: valencia a. Bioinformatics. 2014 Apr 1;30(7):1039-40. doi: 10.1093/bioinformatics/btt639. Epub 2013 Nov 13. Bioinformatics. 2014. PMID: 24227678 Free PMC article.
The CHEMDNER corpus of chemicals and drugs and its annotation principles.
Krallinger M, Rabal O, Leitner F, Vazquez M, Salgado D, Lu Z, Leaman R, Lu Y, Ji D, Lowe DM, Sayle RA, Batista-Navarro RT, Rak R, Huber T, Rocktäschel T, Matos S, Campos D, Tang B, Xu H, Munkhdalai T, Ryu KH, Ramanan SV, Nathan S, Žitnik S, Bajec M, Weber L, Irmer M, Akhondi SA, Kors JA, Xu S, An X, Sikdar UK, Ekbal A, Yoshioka M, Dieb TM, Choi M, Verspoor K, Khabsa M, Giles CL, Liu H, Ravikumar KE, Lamurias A, Couto FM, Dai HJ, Tsai RT, Ata C, Can T, Usié A, Alves R, Segura-Bedmar I, Martínez P, Oyarzabal J, Valencia A. Krallinger M, et al. Among authors: valencia a. J Cheminform. 2015 Jan 19;7(Suppl 1 Text mining for chemistry and the CHEMDNER track):S2. doi: 10.1186/1758-2946-7-S1-S2. eCollection 2015. J Cheminform. 2015. PMID: 25810773 Free PMC article.
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, Leaman R, Gonzalez G, Matos S, Kim S, Wilbur WJ, Rocha L, Shatkay H, Tendulkar AV, Agarwal S, Liu F, Wang X, Rak R, Noto K, Elkan C, Lu Z, Dogan RI, Fontaine JF, Andrade-Navarro MA, Valencia A. Krallinger M, et al. Among authors: valencia a. BMC Bioinformatics. 2011 Oct 3;12 Suppl 8(Suppl 8):S3. doi: 10.1186/1471-2105-12-S8-S3. BMC Bioinformatics. 2011. PMID: 22151929 Free PMC article.
Chapter 14: Cancer genome analysis.
Vazquez M, de la Torre V, Valencia A. Vazquez M, et al. Among authors: valencia a. PLoS Comput Biol. 2012;8(12):e1002824. doi: 10.1371/journal.pcbi.1002824. Epub 2012 Dec 27. PLoS Comput Biol. 2012. PMID: 23300415 Free PMC article.
935 results