Vaickus LJ - Search Results

1

Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study.

Fatemi M, Feng E, Sharma C, Azher Z, Goel T, Ramwala O, Palisoul SM, Barney RE, Perreard L, Kolling FW, Salas LA, Christensen BC, Tsongalis GJ, Vaickus LJ, Levy JJ. Fatemi M, et al. Among authors: vaickus lj. J Pathol Inform. 2023 Mar 29;14:100308. doi: 10.1016/j.jpi.2023.100308. eCollection 2023. J Pathol Inform. 2023. PMID: 37114077 Free PMC article.

2

Identifying aerosolized cyanobacteria in the human respiratory tract: A proposed mechanism for cyanotoxin-associated diseases.

Facciponte DN, Bough MW, Seidler D, Carroll JL, Ashare A, Andrew AS, Tsongalis GJ, Vaickus LJ, Henegan PL, Butt TH, Stommel EW. Facciponte DN, et al. Among authors: vaickus lj. Sci Total Environ. 2018 Dec 15;645:1003-1013. doi: 10.1016/j.scitotenv.2018.07.226. Epub 2018 Jul 20. Sci Total Environ. 2018. PMID: 30248825 Free PMC article.

3

PathFlowAI: A High-Throughput Workflow for Preprocessing, Deep Learning and Interpretation in Digital Pathology.

Levy JJ, Salas LA, Christensen BC, Sriharan A, Vaickus LJ. Levy JJ, et al. Among authors: vaickus lj. Pac Symp Biocomput. 2020;25:403-414. Pac Symp Biocomput. 2020. PMID: 31797614 Free PMC article.

4

A large-scale internal validation study of unsupervised virtual trichrome staining technologies on nonalcoholic steatohepatitis liver biopsies.

Levy JJ, Azizgolshani N, Andersen MJ Jr, Suriawinata A, Liu X, Lisovsky M, Ren B, Bobak CA, Christensen BC, Vaickus LJ. Levy JJ, et al. Among authors: vaickus lj. Mod Pathol. 2021 Apr;34(4):808-822. doi: 10.1038/s41379-020-00718-1. Epub 2020 Dec 9. Mod Pathol. 2021. PMID: 33299110 Free PMC article.

5

Topological Feature Extraction and Visualization of Whole Slide Images using Graph Neural Networks.

Levy J, Haudenschild C, Barwick C, Christensen B, Vaickus L. Levy J, et al. Pac Symp Biocomput. 2021;26:285-296. Pac Symp Biocomput. 2021. PMID: 33691025 Free PMC article. Review.

6

Atypia of undetermined significance in thyroid cytology: Nuclear atypia and architectural atypia are associated with different molecular alterations and risks of malignancy.

Glass RE, Levy JJ, Motanagh SA, Vaickus LJ, Liu X. Glass RE, et al. Among authors: vaickus lj. Cancer Cytopathol. 2021 Dec;129(12):966-972. doi: 10.1002/cncy.22495. Epub 2021 Aug 16. Cancer Cytopathol. 2021. PMID: 34399035 Free article.

7

MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Networks, Inspired by Capsule Networks.

Levy JJ, Chen Y, Azizgolshani N, Petersen CL, Titus AJ, Moen EL, Vaickus LJ, Salas LA, Christensen BC. Levy JJ, et al. Among authors: vaickus lj. NPJ Syst Biol Appl. 2021 Aug 20;7(1):33. doi: 10.1038/s41540-021-00193-7. NPJ Syst Biol Appl. 2021. PMID: 34417465 Free PMC article.

8

Using molecular testing to improve the management of thyroid nodules with indeterminate cytology: an institutional experience with review of molecular alterations.

Glass RE, Marotti JD, Kerr DA, Levy JJ, Vaickus LJ, Gutmann EJ, Tafe LJ, Motanagh SA, Sorensen MJ, Davies L, Liu X. Glass RE, et al. Among authors: vaickus lj. J Am Soc Cytopathol. 2022 Mar-Apr;11(2):79-86. doi: 10.1016/j.jasc.2021.08.004. Epub 2021 Aug 21. J Am Soc Cytopathol. 2022. PMID: 34627720

9

Using Satellite Images and Deep Learning to Identify Associations Between County-Level Mortality and Residential Neighborhood Features Proximal to Schools: A Cross-Sectional Study.

Levy JJ, Lebeaux RM, Hoen AG, Christensen BC, Vaickus LJ, MacKenzie TA. Levy JJ, et al. Among authors: vaickus lj. Front Public Health. 2021 Nov 5;9:766707. doi: 10.3389/fpubh.2021.766707. eCollection 2021. Front Public Health. 2021. PMID: 34805078 Free PMC article.

10

Mixed Effects Machine Learning Models for Colon Cancer Metastasis Prediction using Spatially Localized Immuno-Oncology Markers.

Levy JJ, Bobak CA, Nasir-Moin M, Veziroglu EM, Palisoul SM, Barney RE, Salas LA, Christensen BC, Tsongalis GJ, Vaickus LJ. Levy JJ, et al. Among authors: vaickus lj. Pac Symp Biocomput. 2022;27:175-186. Pac Symp Biocomput. 2022. PMID: 34890147 Free PMC article.

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