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The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping.
Zwanenburg A, Vallières M, Abdalah MA, Aerts HJWL, Andrearczyk V, Apte A, Ashrafinia S, Bakas S, Beukinga RJ, Boellaard R, Bogowicz M, Boldrini L, Buvat I, Cook GJR, Davatzikos C, Depeursinge A, Desseroit MC, Dinapoli N, Dinh CV, Echegaray S, El Naqa I, Fedorov AY, Gatta R, Gillies RJ, Goh V, Götz M, Guckenberger M, Ha SM, Hatt M, Isensee F, Lambin P, Leger S, Leijenaar RTH, Lenkowicz J, Lippert F, Losnegård A, Maier-Hein KH, Morin O, Müller H, Napel S, Nioche C, Orlhac F, Pati S, Pfaehler EAG, Rahmim A, Rao AUK, Scherer J, Siddique MM, Sijtsema NM, Socarras Fernandez J, Spezi E, Steenbakkers RJHM, Tanadini-Lang S, Thorwarth D, Troost EGC, Upadhaya T, Valentini V, van Dijk LV, van Griethuysen J, van Velden FHP, Whybra P, Richter C, Löck S. Zwanenburg A, et al. Among authors: upadhaya t. Radiology. 2020 May;295(2):328-338. doi: 10.1148/radiol.2020191145. Epub 2020 Mar 10. Radiology. 2020. PMID: 32154773 Free PMC article.
Non-invasive imaging prediction of tumor hypoxia: A novel developed and externally validated CT and FDG-PET-based radiomic signatures.
Sanduleanu S, Jochems A, Upadhaya T, Even AJG, Leijenaar RTH, Dankers FJWM, Klaassen R, Woodruff HC, Hatt M, Kaanders HJAM, Hamming-Vrieze O, van Laarhoven HWM, Subramiam RM, Huang SH, O'Sullivan B, Bratman SV, Dubois LJ, Miclea RL, Di Perri D, Geets X, Crispin-Ortuzar M, Apte A, Deasy JO, Oh JH, Lee NY, Humm JL, Schöder H, De Ruysscher D, Hoebers F, Lambin P. Sanduleanu S, et al. Among authors: upadhaya t. Radiother Oncol. 2020 Dec;153:97-105. doi: 10.1016/j.radonc.2020.10.016. Epub 2020 Nov 1. Radiother Oncol. 2020. PMID: 33137396 Free article.
An artificial intelligence framework integrating longitudinal electronic health records with real-world data enables continuous pan-cancer prognostication.
Morin O, Vallières M, Braunstein S, Ginart JB, Upadhaya T, Woodruff HC, Zwanenburg A, Chatterjee A, Villanueva-Meyer JE, Valdes G, Chen W, Hong JC, Yom SS, Solberg TD, Löck S, Seuntjens J, Park C, Lambin P. Morin O, et al. Among authors: upadhaya t. Nat Cancer. 2021 Jul;2(7):709-722. doi: 10.1038/s43018-021-00236-2. Epub 2021 Jul 22. Nat Cancer. 2021. PMID: 35121948
The Image Biomarker Standardization Initiative: Standardized Convolutional Filters for Reproducible Radiomics and Enhanced Clinical Insights.
Whybra P, Zwanenburg A, Andrearczyk V, Schaer R, Apte AP, Ayotte A, Baheti B, Bakas S, Bettinelli A, Boellaard R, Boldrini L, Buvat I, Cook GJR, Dietsche F, Dinapoli N, Gabryś HS, Goh V, Guckenberger M, Hatt M, Hosseinzadeh M, Iyer A, Lenkowicz J, Loutfi MAL, Löck S, Marturano F, Morin O, Nioche C, Orlhac F, Pati S, Rahmim A, Rezaeijo SM, Rookyard CG, Salmanpour MR, Schindele A, Shiri I, Spezi E, Tanadini-Lang S, Tixier F, Upadhaya T, Valentini V, van Griethuysen JJM, Yousefirizi F, Zaidi H, Müller H, Vallières M, Depeursinge A. Whybra P, et al. Among authors: upadhaya t. Radiology. 2024 Feb;310(2):e231319. doi: 10.1148/radiol.231319. Radiology. 2024. PMID: 38319168 Review.
Cancer Informatics for Cancer Centers: Sharing Ideas on How to Build an Artificial Intelligence-Ready Informatics Ecosystem for Radiation Oncology.
Bitterman DS, Gensheimer MF, Jaffray D, Pryma DA, Jiang SB, Morin O, Ginart JB, Upadhaya T, Vallis KA, Buatti JM, Deasy J, Hsiao HT, Chung C, Fuller CD, Greenspan E, Cloyd-Warwick K, Courdy S, Mao A, Barnholtz-Sloan J, Topaloglu U, Hands I, Maurer I, Terry M, Curran WJ, Le QT, Nadaf S, Kibbe W. Bitterman DS, et al. Among authors: upadhaya t. JCO Clin Cancer Inform. 2023 Sep;7:e2300136. doi: 10.1200/CCI.23.00136. JCO Clin Cancer Inform. 2023. PMID: 38055914 Free article.
Utilizing social media data for pharmacovigilance: A review.
Sarker A, Ginn R, Nikfarjam A, O'Connor K, Smith K, Jayaraman S, Upadhaya T, Gonzalez G. Sarker A, et al. Among authors: upadhaya t. J Biomed Inform. 2015 Apr;54:202-12. doi: 10.1016/j.jbi.2015.02.004. Epub 2015 Feb 23. J Biomed Inform. 2015. PMID: 25720841 Free PMC article. Review.