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Differential inhibition of intra- and inter-molecular protease cleavages by antiviral compounds.
J Virol. 2023 Dec 21;97(12):e0092823. doi: 10.1128/jvi.00928-23. Epub 2023 Dec 4.
J Virol. 2023.
PMID: 38047713
Free PMC article.
dms-viz: Structure-informed visualizations for deep mutational scanning and other mutation-based datasets.
Hannon WW, Bloom JD.
Hannon WW, et al.
bioRxiv [Preprint]. 2023 Nov 1:2023.10.29.564578. doi: 10.1101/2023.10.29.564578.
bioRxiv. 2023.
PMID: 37961289
Free PMC article.
Preprint.
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Fitness effects of mutations to SARS-CoV-2 proteins.
Bloom JD, Neher RA.
Bloom JD, et al.
Virus Evol. 2023 Sep 18;9(2):vead055. doi: 10.1093/ve/vead055. eCollection 2023.
Virus Evol. 2023.
PMID: 37727875
Free PMC article.
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Accelerating antiviral drug discovery: lessons from COVID-19.
von Delft A, Hall MD, Kwong AD, Purcell LA, Saikatendu KS, Schmitz U, Tallarico JA, Lee AA.
von Delft A, et al.
Nat Rev Drug Discov. 2023 Jul;22(7):585-603. doi: 10.1038/s41573-023-00692-8. Epub 2023 May 12.
Nat Rev Drug Discov. 2023.
PMID: 37173515
Free PMC article.
Review.
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Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease.
Godoy AS, Nakamura AM, Douangamath A, Song Y, Noske GD, Gawriljuk VO, Fernandes RS, Pereira HDM, Oliveira KIZ, Fearon D, Dias A, Krojer T, Fairhead M, Powell A, Dunnet L, Brandao-Neto J, Skyner R, Chalk R, Bajusz D, Bege M, Borbás A, Keserű GM, von Delft F, Oliva G.
Godoy AS, et al.
Nucleic Acids Res. 2023 Jun 9;51(10):5255-5270. doi: 10.1093/nar/gkad314.
Nucleic Acids Res. 2023.
PMID: 37115000
Free PMC article.
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An in-solution snapshot of SARS-COV-2 main protease maturation process and inhibition.
Noske GD, Song Y, Fernandes RS, Chalk R, Elmassoudi H, Koekemoer L, Owen CD, El-Baba TJ, Robinson CV; COVID Moonshot Consortium; Oliva G, Godoy AS.
Noske GD, et al.
Nat Commun. 2023 Mar 20;14(1):1545. doi: 10.1038/s41467-023-37035-5.
Nat Commun. 2023.
PMID: 36941262
Free PMC article.
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Turning high-throughput structural biology into predictive inhibitor design.
Saar KL, McCorkindale W, Fearon D, Boby M, Barr H, Ben-Shmuel A; COVID Moonshot Consortium; London N, von Delft F, Chodera JD, Lee AA.
Saar KL, et al.
Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2214168120. doi: 10.1073/pnas.2214168120. Epub 2023 Mar 6.
Proc Natl Acad Sci U S A. 2023.
PMID: 36877844
Free PMC article.
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Fitness effects of mutations to SARS-CoV-2 proteins.
Bloom JD, Neher RA.
Bloom JD, et al.
bioRxiv [Preprint]. 2023 Jun 6:2023.01.30.526314. doi: 10.1101/2023.01.30.526314.
bioRxiv. 2023.
PMID: 36778462
Free PMC article.
Updated.
Preprint.
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