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A single-cell transcriptional timelapse of mouse embryonic development, from gastrula to pup.
Qiu C, Martin BK, Welsh IC, Daza RM, Le TM, Huang X, Nichols EK, Taylor ML, Fulton O, O'Day DR, Gomes AR, Ilcisin S, Srivatsan S, Deng X, Disteche CM, Noble WS, Hamazaki N, Moens CB, Kimelman D, Cao J, Schier AF, Spielmann M, Murray SA, Trapnell C, Shendure J. Qiu C, et al. Among authors: trapnell c. bioRxiv [Preprint]. 2023 Apr 5:2023.04.05.535726. doi: 10.1101/2023.04.05.535726. bioRxiv. 2023. PMID: 37066300 Free PMC article. Preprint.
Pulmonary osteoclast-like cells in silica induced pulmonary fibrosis.
Hasegawa Y, Franks JM, Tanaka Y, Uehara Y, Read DF, Williams C, Srivatsan S, Pitstick LB, Nikolaidis NM, Shaver CM, Wu H, Gardner JC, Osterburg AR, Yu JJ, Kopras EJ, Teitelbaum SL, Wikenheiser-Brokamp KA, Trapnell C, McCormack FX. Hasegawa Y, et al. Among authors: trapnell c. bioRxiv [Preprint]. 2023 Feb 18:2023.02.17.528996. doi: 10.1101/2023.02.17.528996. bioRxiv. 2023. PMID: 36824953 Free PMC article. Preprint.
Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies.
Edman NI, Redler RL, Phal A, Schlichthaerle T, Srivatsan SR, Etemadi A, An SJ, Favor A, Ehnes D, Li Z, Praetorius F, Gordon M, Yang W, Coventry B, Hicks DR, Cao L, Bethel N, Heine P, Murray A, Gerben S, Carter L, Miranda M, Negahdari B, Lee S, Trapnell C, Stewart L, Ekiert DC, Schlessinger J, Shendure J, Bhabha G, Ruohola-Baker H, Baker D. Edman NI, et al. Among authors: trapnell c. bioRxiv [Preprint]. 2023 Mar 15:2023.03.14.532666. doi: 10.1101/2023.03.14.532666. bioRxiv. 2023. PMID: 36993355 Free PMC article. Preprint.
Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy.
McFaline-Figueroa JL, Srivatsan S, Hill AJ, Gasperini M, Jackson DL, Saunders L, Domcke S, Regalado SG, Lazarchuck P, Alvarez S, Monnat RJ Jr, Shendure J, Trapnell C. McFaline-Figueroa JL, et al. Among authors: trapnell c. bioRxiv [Preprint]. 2023 Jun 14:2023.03.10.531983. doi: 10.1101/2023.03.10.531983. bioRxiv. 2023. PMID: 37398090 Free PMC article. Updated. Preprint.
Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy.
McFaline-Figueroa JL, Srivatsan S, Hill AJ, Gasperini M, Jackson DL, Saunders L, Domcke S, Regalado SG, Lazarchuck P, Alvarez S, Monnat RJ Jr, Shendure J, Trapnell C. McFaline-Figueroa JL, et al. Among authors: trapnell c. Cell Genom. 2024 Feb 14;4(2):100487. doi: 10.1016/j.xgen.2023.100487. Epub 2024 Jan 25. Cell Genom. 2024. PMID: 38278156 Free PMC article.
Transcriptional Activation of Regenerative Hematopoiesis via Vascular Niche Sensing.
Itkin T, Houghton S, Schreiner R, Lin Y, Badwe CR, Voisin V, Murison A, Seyedhassantehrani N, Kaufmann KB, Garcia-Prat L, Booth GT, Geng F, Liu Y, Gomez-Salinero JM, Shieh JH, Redmond D, Xiang JZ, Josefowicz SZ, Trapnell C, Spencer JA, Zangi L, Hadland B, Dick JE, Xie SZ, Rafii S. Itkin T, et al. Among authors: trapnell c. bioRxiv [Preprint]. 2023 Mar 29:2023.03.27.534417. doi: 10.1101/2023.03.27.534417. bioRxiv. 2023. PMID: 37034724 Free PMC article. Preprint.
Airway epithelial interferon response to SARS-CoV-2 is inferior to rhinovirus and heterologous rhinovirus infection suppresses SARS-CoV-2 replication.
Vanderwall ER, Barrow KA, Rich LM, Read DF, Trapnell C, Okoloko O, Ziegler SF, Hallstrand TS, White MP, Debley JS. Vanderwall ER, et al. Among authors: trapnell c. bioRxiv [Preprint]. 2021 Nov 23:2021.11.20.469409. doi: 10.1101/2021.11.20.469409. bioRxiv. 2021. PMID: 34845445 Free PMC article. Updated. Preprint.
135 results