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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout GB, Faeder JR, Freiburger AP, Fröhlich F, Funahashi A, Garny A, Gennari JH, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein JL, Hermjakob H, Hoops S, Ison JC, Jahn D, Jakubowski HV, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff RSM, Mandal S, McDougal R, Medley JK, Mendes P, Müller R, Myers CJ, Naldi A, Nguyen TVN, Nickerson DP, Olivier BG, Patoliya D, Paulevé L, Petzold LR, Priya A, Rampadarath AK, Rohwer JM, Saglam AS, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas PJ, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg AP, Schaff JC, Blinov ML, Sauro HM, Moraru II, Karr JR. Shaikh B, et al. Among authors: thomas pj. Nucleic Acids Res. 2022 Jul 5;50(W1):W108-W114. doi: 10.1093/nar/gkac331. Nucleic Acids Res. 2022. PMID: 35524558 Free PMC article.
Stochastic Hazard Analysis of Genetic Circuits in iBioSim and STAMINA.
Buecherl L, Roberts R, Fontanarrosa P, Thomas PJ, Mante J, Zhang Z, Myers CJ. Buecherl L, et al. Among authors: thomas pj. ACS Synth Biol. 2021 Oct 15;10(10):2532-2540. doi: 10.1021/acssynbio.1c00159. Epub 2021 Oct 4. ACS Synth Biol. 2021. PMID: 34606710
In vitro modulator responsiveness of 655 CFTR variants found in people with cystic fibrosis.
Bihler H, Sivachenko A, Millen L, Bhatt P, Patel AT, Chin J, Bailey V, Musisi I, LaPan A, Allaire NE, Conte J, Simon NR, Magaret AS, Raraigh KS, Cutting GR, Skach WR, Bridges RJ, Thomas PJ, Mense M. Bihler H, et al. Among authors: thomas pj. J Cyst Fibros. 2024 Feb 21:S1569-1993(24)00021-3. doi: 10.1016/j.jcf.2024.02.006. Online ahead of print. J Cyst Fibros. 2024. PMID: 38388235 Free article.
A genome catalog of the early-life human skin microbiome.
Shen Z, Robert L, Stolpman M, Che Y, Allen KJ, Saffery R, Walsh A, Young A, Eckert J, Deming C, Chen Q, Conlan S, Laky K, Li JM, Chatman L, Kashaf SS; NISC Comparative Sequencing Program; VITALITY team; Kong HH, Frischmeyer-Guerrerio PA, Perrett KP, Segre JA. Shen Z, et al. Genome Biol. 2023 Nov 10;24(1):252. doi: 10.1186/s13059-023-03090-w. Genome Biol. 2023. PMID: 37946302 Free PMC article.
503 results