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Technology dictates algorithms: recent developments in read alignment.
Alser M, Rotman J, Deshpande D, Taraszka K, Shi H, Baykal PI, Yang HT, Xue V, Knyazev S, Singer BD, Balliu B, Koslicki D, Skums P, Zelikovsky A, Alkan C, Mutlu O, Mangul S. Alser M, et al. Among authors: taraszka k. Genome Biol. 2021 Aug 26;22(1):249. doi: 10.1186/s13059-021-02443-7. Genome Biol. 2021. PMID: 34446078 Free PMC article. Review.
Identifying causal variants by fine mapping across multiple studies.
LaPierre N, Taraszka K, Huang H, He R, Hormozdiari F, Eskin E. LaPierre N, et al. Among authors: taraszka k. PLoS Genet. 2021 Sep 20;17(9):e1009733. doi: 10.1371/journal.pgen.1009733. eCollection 2021 Sep. PLoS Genet. 2021. PMID: 34543273 Free PMC article.
Ancestry-driven recalibration of tumor mutational burden and disparate clinical outcomes in response to immune checkpoint inhibitors.
Nassar AH, Adib E, Abou Alaiwi S, El Zarif T, Groha S, Akl EW, Nuzzo PV, Mouhieddine TH, Perea-Chamblee T, Taraszka K, El-Khoury H, Labban M, Fong C, Arora KS, Labaki C, Xu W, Sonpavde G, Haddad RI, Mouw KW, Giannakis M, Hodi FS, Zaitlen N, Schoenfeld AJ, Schultz N, Berger MF, MacConaill LE, Ananda G, Kwiatkowski DJ, Choueiri TK, Schrag D, Carrot-Zhang J, Gusev A. Nassar AH, et al. Among authors: taraszka k. Cancer Cell. 2022 Oct 10;40(10):1161-1172.e5. doi: 10.1016/j.ccell.2022.08.022. Epub 2022 Sep 29. Cancer Cell. 2022. PMID: 36179682 Free PMC article.
MSGene: Derivation and validation of a multistate model for lifetime risk of coronary artery disease using genetic risk and the electronic health record.
Urbut SM, Yeung MW, Khurshid S, Cho SMJ, Schuermans A, German J, Taraszka K, Fahed AC, Ellinor P, Trinquart L, Parmigiani G, Gusev A, Natarajan P. Urbut SM, et al. Among authors: taraszka k. medRxiv [Preprint]. 2023 Nov 8:2023.11.08.23298229. doi: 10.1101/2023.11.08.23298229. medRxiv. 2023. PMID: 37986972 Free PMC article. Preprint.
Tissue informative cell-free DNA methylation sites in amyotrophic lateral sclerosis.
Caggiano C, Morselli M, Qian X, Celona B, Thompson M, Wani S, Tosevska A, Taraszka K, Heuer G, Ngo S, Steyn F, Nestor P, Wallace L, McCombe P, Heggie S, Thorpe K, McElligott C, English G, Henders A, Henderson R, Lomen-Hoerth C, Wray N, McRae A, Pellegrini M, Garton F, Zaitlen N. Caggiano C, et al. Among authors: taraszka k. medRxiv [Preprint]. 2024 Apr 10:2024.04.08.24305503. doi: 10.1101/2024.04.08.24305503. medRxiv. 2024. PMID: 38645132 Free PMC article. Preprint.
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