Taly JF - Search Results

1

Large-scale screening of a targeted Enterococcus faecalis mutant library identifies envelope fitness factors.

Rigottier-Gois L, Alberti A, Houel A, Taly JF, Palcy P, Manson J, Pinto D, Matos RC, Carrilero L, Montero N, Tariq M, Karsens H, Repp C, Kropec A, Budin-Verneuil A, Benachour A, Sauvageot N, Bizzini A, Gilmore MS, Bessières P, Kok J, Huebner J, Lopes F, Gonzalez-Zorn B, Hartke A, Serror P. Rigottier-Gois L, et al. Among authors: taly jf. PLoS One. 2011;6(12):e29023. doi: 10.1371/journal.pone.0029023. Epub 2011 Dec 15. PLoS One. 2011. PMID: 22194979 Free PMC article.

2

Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?

Taly JF, Marin A, Gibrat JF. Taly JF, et al. BMC Bioinformatics. 2008 Jan 7;9:6. doi: 10.1186/1471-2105-9-6. BMC Bioinformatics. 2008. PMID: 18179702 Free PMC article.

3

Protein secondary structure assignment revisited: a detailed analysis of different assignment methods.

Martin J, Letellier G, Marin A, Taly JF, de Brevern AG, Gibrat JF. Martin J, et al. Among authors: taly jf. BMC Struct Biol. 2005 Sep 15;5:17. doi: 10.1186/1472-6807-5-17. BMC Struct Biol. 2005. PMID: 16164759 Free PMC article.

4

STRIKE: evaluation of protein MSAs using a single 3D structure.

Kemena C, Taly JF, Kleinjung J, Notredame C. Kemena C, et al. Among authors: taly jf. Bioinformatics. 2011 Dec 15;27(24):3385-91. doi: 10.1093/bioinformatics/btr587. Epub 2011 Oct 28. Bioinformatics. 2011. PMID: 22039207 Free PMC article.

5

Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee.

Chang JM, Di Tommaso P, Taly JF, Notredame C. Chang JM, et al. Among authors: taly jf. BMC Bioinformatics. 2012 Mar 28;13 Suppl 4(Suppl 4):S1. doi: 10.1186/1471-2105-13-S4-S1. BMC Bioinformatics. 2012. PMID: 22536955 Free PMC article.

6

Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures.

Taly JF, Magis C, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Kemena C, Notredame C. Taly JF, et al. Nat Protoc. 2011 Nov;6(11):1669-82. doi: 10.1038/nprot.2011.393. Nat Protoc. 2011. PMID: 21979275

7

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension.

Di Tommaso P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM, Taly JF, Notredame C. Di Tommaso P, et al. Among authors: taly jf. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W13-7. doi: 10.1093/nar/gkr245. Epub 2011 May 9. Nucleic Acids Res. 2011. PMID: 21558174 Free PMC article.

8

T-Coffee: Tree-based consistency objective function for alignment evaluation.

Magis C, Taly JF, Bussotti G, Chang JM, Di Tommaso P, Erb I, Espinosa-Carrasco J, Notredame C. Magis C, et al. Among authors: taly jf. Methods Mol Biol. 2014;1079:117-29. doi: 10.1007/978-1-62703-646-7_7. Methods Mol Biol. 2014. PMID: 24170398

9

Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations.

Chang JM, Taly JF, Erb I, Sung TY, Hsu WL, Tang CY, Notredame C, Su EC. Chang JM, et al. Among authors: taly jf. PLoS One. 2013 Oct 11;8(10):e75542. doi: 10.1371/journal.pone.0075542. eCollection 2013. PLoS One. 2013. PMID: 24146760 Free PMC article.

10

Cyclosporin A treatment of Leishmania donovani reveals stage-specific functions of cyclophilins in parasite proliferation and viability.

Yau WL, Blisnick T, Taly JF, Helmer-Citterich M, Schiene-Fischer C, Leclercq O, Li J, Schmidt-Arras D, Morales MA, Notredame C, Romo D, Bastin P, Späth GF. Yau WL, et al. Among authors: taly jf. PLoS Negl Trop Dis. 2010 Jun 29;4(6):e729. doi: 10.1371/journal.pntd.0000729. PLoS Negl Trop Dis. 2010. PMID: 20614016 Free PMC article.

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