Takaki Y - Search Results

1

Isolation of an archaeon at the prokaryote-eukaryote interface.

Imachi H, Nobu MK, Nakahara N, Morono Y, Ogawara M, Takaki Y, Takano Y, Uematsu K, Ikuta T, Ito M, Matsui Y, Miyazaki M, Murata K, Saito Y, Sakai S, Song C, Tasumi E, Yamanaka Y, Yamaguchi T, Kamagata Y, Tamaki H, Takai K. Imachi H, et al. Among authors: takaki y. Nature. 2020 Jan;577(7791):519-525. doi: 10.1038/s41586-019-1916-6. Epub 2020 Jan 15. Nature. 2020. PMID: 31942073 Free PMC article.

2

Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii.

Kuwahara H, Yoshida T, Takaki Y, Shimamura S, Nishi S, Harada M, Matsuyama K, Takishita K, Kawato M, Uematsu K, Fujiwara Y, Sato T, Kato C, Kitagawa M, Kato I, Maruyama T. Kuwahara H, et al. Among authors: takaki y. Curr Biol. 2007 May 15;17(10):881-6. doi: 10.1016/j.cub.2007.04.039. Curr Biol. 2007. PMID: 17493812 Free article.

3

Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens.

Nakagawa S, Takaki Y, Shimamura S, Reysenbach AL, Takai K, Horikoshi K. Nakagawa S, et al. Among authors: takaki y. Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):12146-50. doi: 10.1073/pnas.0700687104. Epub 2007 Jul 5. Proc Natl Acad Sci U S A. 2007. PMID: 17615243 Free PMC article.

4

Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula.

Kobayashi T, Koide O, Mori K, Shimamura S, Matsuura T, Miura T, Takaki Y, Morono Y, Nunoura T, Imachi H, Inagaki F, Takai K, Horikoshi K. Kobayashi T, et al. Among authors: takaki y. Extremophiles. 2008 Jul;12(4):519-27. doi: 10.1007/s00792-008-0157-7. Epub 2008 Mar 27. Extremophiles. 2008. PMID: 18368287

5

Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1.

Takaki Y, Shimamura S, Nakagawa S, Fukuhara Y, Horikawa H, Ankai A, Harada T, Hosoyama A, Oguchi A, Fukui S, Fujita N, Takami H, Takai K. Takaki Y, et al. DNA Res. 2010 Jun;17(3):123-37. doi: 10.1093/dnares/dsq005. Epub 2010 Feb 26. DNA Res. 2010. PMID: 20189949 Free PMC article.

6

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.

Nunoura T, Takaki Y, Kakuta J, Nishi S, Sugahara J, Kazama H, Chee GJ, Hattori M, Kanai A, Atomi H, Takai K, Takami H. Nunoura T, et al. Among authors: takaki y. Nucleic Acids Res. 2011 Apr;39(8):3204-23. doi: 10.1093/nar/gkq1228. Epub 2010 Dec 15. Nucleic Acids Res. 2011. PMID: 21169198 Free PMC article.

7

Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales.

Sakai S, Takaki Y, Shimamura S, Sekine M, Tajima T, Kosugi H, Ichikawa N, Tasumi E, Hiraki AT, Shimizu A, Kato Y, Nishiko R, Mori K, Fujita N, Imachi H, Takai K. Sakai S, et al. Among authors: takaki y. PLoS One. 2011;6(7):e22898. doi: 10.1371/journal.pone.0022898. Epub 2011 Jul 29. PLoS One. 2011. PMID: 21829548 Free PMC article.

8

A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem.

Takami H, Noguchi H, Takaki Y, Uchiyama I, Toyoda A, Nishi S, Chee GJ, Arai W, Nunoura T, Itoh T, Hattori M, Takai K. Takami H, et al. Among authors: takaki y. PLoS One. 2012;7(1):e30559. doi: 10.1371/journal.pone.0030559. Epub 2012 Jan 27. PLoS One. 2012. PMID: 22303444 Free PMC article.

9

Genomic heterogeneity in a natural archaeal population suggests a model of tRNA gene disruption.

Sugahara J, Fujishima K, Nunoura T, Takaki Y, Takami H, Takai K, Tomita M, Kanai A. Sugahara J, et al. Among authors: takaki y. PLoS One. 2012;7(3):e32504. doi: 10.1371/journal.pone.0032504. Epub 2012 Mar 5. PLoS One. 2012. PMID: 22403667 Free PMC article.

10

Microbial diversity in deep-sea methane seep sediments presented by SSU rRNA gene tag sequencing.

Nunoura T, Takaki Y, Kazama H, Hirai M, Ashi J, Imachi H, Takai K. Nunoura T, et al. Among authors: takaki y. Microbes Environ. 2012;27(4):382-90. doi: 10.1264/jsme2.me12032. Epub 2012 Apr 18. Microbes Environ. 2012. PMID: 22510646 Free PMC article.

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