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A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer.
Nat Ecol Evol. 2024 May;8(5):986-998. doi: 10.1038/s41559-024-02357-0. Epub 2024 Mar 5.
Nat Ecol Evol. 2024.
PMID: 38443606
From microbiome composition to functional engineering, one step at a time.
Burz SD, Causevic S, Dal Co A, Dmitrijeva M, Engel P, Garrido-Sanz D, Greub G, Hapfelmeier S, Hardt W-D, Hatzimanikatis V, Heiman CM, Herzog MK-M, Hockenberry A, Keel C, Keppler A, Lee S-J, Luneau J, Malfertheiner L, Mitri S, Ngyuen B, Oftadeh O, Pacheco AR, Peaudecerf F, Resch G, Ruscheweyh H-J, Sahin A, Sanders IR, Slack E, Sunagawa S, Tackmann J, Tecon R, Ugolini GS, Vacheron J, van der Meer JR, Vayena E, Vonaesch P, Vorholt JA.
Burz SD, et al. Among authors: tackmann j.
Microbiol Mol Biol Rev. 2023 Dec 20;87(4):e0006323. doi: 10.1128/mmbr.00063-23. Epub 2023 Nov 10.
Microbiol Mol Biol Rev. 2023.
PMID: 37947420
Free PMC article.
Review.
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Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation.
Čaušević S, Tackmann J, Sentchilo V, von Mering C, van der Meer JR.
Čaušević S, et al. Among authors: tackmann j.
mSystems. 2022 Apr 26;7(2):e0016022. doi: 10.1128/msystems.00160-22. Epub 2022 Mar 30.
mSystems. 2022.
PMID: 35353008
Free PMC article.
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Fermentation Ability of Gut Microbiota of Wild Japanese Macaques in the Highland and Lowland Yakushima: In Vitro Fermentation Assay and Genetic Analyses.
Hanya G, Tackmann J, Sawada A, Lee W, Pokharel SS, de Castro Maciel VG, Toge A, Kuroki K, Otsuka R, Mabuchi R, Liu J, Hatakeyama M, Yamasaki E, von Mering C, Shimizu-Inatsugi R, Hayakawa T, Shimizu KK, Ushida K.
Hanya G, et al. Among authors: tackmann j.
Microb Ecol. 2020 Aug;80(2):459-474. doi: 10.1007/s00248-020-01515-8. Epub 2020 Apr 24.
Microb Ecol. 2020.
PMID: 32328670
Free article.
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Rapid Inference of Direct Interactions in Large-Scale Ecological Networks from Heterogeneous Microbial Sequencing Data.
Tackmann J, Matias Rodrigues JF, von Mering C.
Tackmann J, et al.
Cell Syst. 2019 Sep 25;9(3):286-296.e8. doi: 10.1016/j.cels.2019.08.002. Epub 2019 Sep 18.
Cell Syst. 2019.
PMID: 31542415
Free article.
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Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites.
Tackmann J, Arora N, Schmidt TSB, Rodrigues JFM, von Mering C.
Tackmann J, et al.
Microbiome. 2018 Oct 24;6(1):192. doi: 10.1186/s40168-018-0565-6.
Microbiome. 2018.
PMID: 30355348
Free PMC article.
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MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis.
Matias Rodrigues JF, Schmidt TSB, Tackmann J, von Mering C.
Matias Rodrigues JF, et al. Among authors: tackmann j.
Bioinformatics. 2017 Dec 1;33(23):3808-3810. doi: 10.1093/bioinformatics/btx517.
Bioinformatics. 2017.
PMID: 28961926
Free PMC article.
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