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KnotProt 2.0: a database of proteins with knots and other entangled structures.
Dabrowski-Tumanski P, Rubach P, Goundaroulis D, Dorier J, Sulkowski P, Millett KC, Rawdon EJ, Stasiak A, Sulkowska JI. Dabrowski-Tumanski P, et al. Among authors: sulkowski p. Nucleic Acids Res. 2019 Jan 8;47(D1):D367-D375. doi: 10.1093/nar/gky1140. Nucleic Acids Res. 2019. PMID: 30508159 Free PMC article.
KnotProt: a database of proteins with knots and slipknots.
Jamroz M, Niemyska W, Rawdon EJ, Stasiak A, Millett KC, Sułkowski P, Sulkowska JI. Jamroz M, et al. Among authors: sulkowski p. Nucleic Acids Res. 2015 Jan;43(Database issue):D306-14. doi: 10.1093/nar/gku1059. Epub 2014 Oct 31. Nucleic Acids Res. 2015. PMID: 25361973 Free PMC article.
Complex lasso: new entangled motifs in proteins.
Niemyska W, Dabrowski-Tumanski P, Kadlof M, Haglund E, Sułkowski P, Sulkowska JI. Niemyska W, et al. Among authors: sulkowski p. Sci Rep. 2016 Nov 22;6:36895. doi: 10.1038/srep36895. Sci Rep. 2016. PMID: 27874096 Free PMC article.
Genus for biomolecules.
Rubach P, Zajac S, Jastrzebski B, Sulkowska JI, Sułkowski P. Rubach P, et al. Among authors: sulkowski p. Nucleic Acids Res. 2020 Jan 8;48(D1):D1129-D1135. doi: 10.1093/nar/gkz845. Nucleic Acids Res. 2020. PMID: 31584078 Free PMC article.
Tightening of knots in proteins.
Sułkowska JI, Sułkowski P, Szymczak P, Cieplak M. Sułkowska JI, et al. Among authors: sulkowski p. Phys Rev Lett. 2008 Feb 8;100(5):058106. doi: 10.1103/PhysRevLett.100.058106. Epub 2008 Feb 8. Phys Rev Lett. 2008. PMID: 18352439
Stabilizing effect of knots on proteins.
Sułkowska JI, Sulkowski P, Szymczak P, Cieplak M. Sułkowska JI, et al. Among authors: sulkowski p. Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19714-9. doi: 10.1073/pnas.0805468105. Epub 2008 Dec 8. Proc Natl Acad Sci U S A. 2008. PMID: 19064918 Free PMC article.
Dodging the crisis of folding proteins with knots.
Sułkowska JI, Sułkowski P, Onuchic J. Sułkowska JI, et al. Among authors: sulkowski p. Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3119-24. doi: 10.1073/pnas.0811147106. Epub 2009 Feb 11. Proc Natl Acad Sci U S A. 2009. PMID: 19211785 Free PMC article.
Jamming proteins with slipknots and their free energy landscape.
Sułkowska JI, Sułkowski P, Onuchic JN. Sułkowska JI, et al. Among authors: sulkowski p. Phys Rev Lett. 2009 Dec 31;103(26):268103. doi: 10.1103/PhysRevLett.103.268103. Epub 2009 Dec 29. Phys Rev Lett. 2009. PMID: 20366349 Free article.
Untying knots in proteins.
Sułkowska JI, Sułkowski P, Szymczak P, Cieplak M. Sułkowska JI, et al. Among authors: sulkowski p. J Am Chem Soc. 2010 Oct 13;132(40):13954-6. doi: 10.1021/ja102441z. J Am Chem Soc. 2010. PMID: 20857930
PyLasso: a PyMOL plugin to identify lassos.
Gierut AM, Niemyska W, Dabrowski-Tumanski P, Sulkowski P, Sulkowska JI. Gierut AM, et al. Among authors: sulkowski p. Bioinformatics. 2017 Dec 1;33(23):3819-3821. doi: 10.1093/bioinformatics/btx493. Bioinformatics. 2017. PMID: 28961868
32 results