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KnotProt 2.0: a database of proteins with knots and other entangled structures.
Dabrowski-Tumanski P, Rubach P, Goundaroulis D, Dorier J, Sulkowski P, Millett KC, Rawdon EJ, Stasiak A, Sulkowska JI. Dabrowski-Tumanski P, et al. Among authors: sulkowska ji. Nucleic Acids Res. 2019 Jan 8;47(D1):D367-D375. doi: 10.1093/nar/gky1140. Nucleic Acids Res. 2019. PMID: 30508159 Free PMC article.
Tightening of knots in proteins.
Sułkowska JI, Sułkowski P, Szymczak P, Cieplak M. Sułkowska JI, et al. Phys Rev Lett. 2008 Feb 8;100(5):058106. doi: 10.1103/PhysRevLett.100.058106. Epub 2008 Feb 8. Phys Rev Lett. 2008. PMID: 18352439
Stabilizing effect of knots on proteins.
Sułkowska JI, Sulkowski P, Szymczak P, Cieplak M. Sułkowska JI, et al. Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19714-9. doi: 10.1073/pnas.0805468105. Epub 2008 Dec 8. Proc Natl Acad Sci U S A. 2008. PMID: 19064918 Free PMC article.
Dodging the crisis of folding proteins with knots.
Sułkowska JI, Sułkowski P, Onuchic J. Sułkowska JI, et al. Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3119-24. doi: 10.1073/pnas.0811147106. Epub 2009 Feb 11. Proc Natl Acad Sci U S A. 2009. PMID: 19211785 Free PMC article.
Untying knots in proteins.
Sułkowska JI, Sułkowski P, Szymczak P, Cieplak M. Sułkowska JI, et al. J Am Chem Soc. 2010 Oct 13;132(40):13954-6. doi: 10.1021/ja102441z. J Am Chem Soc. 2010. PMID: 20857930
Conservation of complex knotting and slipknotting patterns in proteins.
Sułkowska JI, Rawdon EJ, Millett KC, Onuchic JN, Stasiak A. Sułkowska JI, et al. Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):E1715-23. doi: 10.1073/pnas.1205918109. Epub 2012 Jun 8. Proc Natl Acad Sci U S A. 2012. PMID: 22685208 Free PMC article.
Knotting pathways in proteins.
Sułkowska JI, Noel JK, Ramírez-Sarmiento CA, Rawdon EJ, Millett KC, Onuchic JN. Sułkowska JI, et al. Biochem Soc Trans. 2013 Apr;41(2):523-7. doi: 10.1042/BST20120342. Biochem Soc Trans. 2013. PMID: 23514147 Review.
Identifying knots in proteins.
Millett KC, Rawdon EJ, Stasiak A, Sułkowska JI. Millett KC, et al. Among authors: sulkowska ji. Biochem Soc Trans. 2013 Apr;41(2):533-7. doi: 10.1042/BST20120339. Biochem Soc Trans. 2013. PMID: 23514149 Review.
Knot localization in proteins.
Rawdon EJ, Millett KC, Sułkowska JI, Stasiak A. Rawdon EJ, et al. Among authors: sulkowska ji. Biochem Soc Trans. 2013 Apr;41(2):538-41. doi: 10.1042/BST20120329. Biochem Soc Trans. 2013. PMID: 23514150 Review.
70 results