Sulheim S - Search Results

1

Addressing uncertainty in genome-scale metabolic model reconstruction and analysis.

Bernstein DB, Sulheim S, Almaas E, Segrè D. Bernstein DB, et al. Among authors: sulheim s. Genome Biol. 2021 Feb 18;22(1):64. doi: 10.1186/s13059-021-02289-z. Genome Biol. 2021. PMID: 33602294 Free PMC article. Review.

2

Predicting Strain Engineering Strategies Using iKS1317: A Genome-Scale Metabolic Model of Streptomyces coelicolor.

Kumelj T, Sulheim S, Wentzel A, Almaas E. Kumelj T, et al. Among authors: sulheim s. Biotechnol J. 2019 Apr;14(4):e1800180. doi: 10.1002/biot.201800180. Epub 2019 Jan 16. Biotechnol J. 2019. PMID: 30525286

3

Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.

Sulheim S, Kumelj T, van Dissel D, Salehzadeh-Yazdi A, Du C, van Wezel GP, Nieselt K, Almaas E, Wentzel A, Kerkhoven EJ. Sulheim S, et al. iScience. 2020 Sep 3;23(9):101525. doi: 10.1016/j.isci.2020.101525. eCollection 2020 Sep 25. iScience. 2020. PMID: 32942174 Free PMC article.

4

Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.

Sulheim S, Fossheim FA, Wentzel A, Almaas E. Sulheim S, et al. BMC Bioinformatics. 2021 Feb 23;22(1):81. doi: 10.1186/s12859-021-03985-0. BMC Bioinformatics. 2021. PMID: 33622234 Free PMC article.

5

Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus.

Ofaim S, Sulheim S, Almaas E, Sher D, Segrè D. Ofaim S, et al. Among authors: sulheim s. Front Genet. 2021 Feb 9;12:586293. doi: 10.3389/fgene.2021.586293. eCollection 2021. Front Genet. 2021. PMID: 33633777 Free PMC article.

6

Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.

Sulheim S, Fossheim FA, Wentzel A, Almaas E. Sulheim S, et al. BMC Bioinformatics. 2021 Apr 19;22(1):199. doi: 10.1186/s12859-021-04094-8. BMC Bioinformatics. 2021. PMID: 33874882 Free PMC article. No abstract available.

7

A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS).

Dukovski I, Bajić D, Chacón JM, Quintin M, Vila JCC, Sulheim S, Pacheco AR, Bernstein DB, Riehl WJ, Korolev KS, Sanchez A, Harcombe WR, Segrè D. Dukovski I, et al. Among authors: sulheim s. Nat Protoc. 2021 Nov;16(11):5030-5082. doi: 10.1038/s41596-021-00593-3. Epub 2021 Oct 11. Nat Protoc. 2021. PMID: 34635859 Free PMC article. Review.

8

Enhancing Microbiome Research through Genome-Scale Metabolic Modeling.

Ankrah NYD, Bernstein DB, Biggs M, Carey M, Engevik M, García-Jiménez B, Lakshmanan M, Pacheco AR, Sulheim S, Medlock GL. Ankrah NYD, et al. Among authors: sulheim s. mSystems. 2021 Dec 21;6(6):e0059921. doi: 10.1128/mSystems.00599-21. Epub 2021 Dec 14. mSystems. 2021. PMID: 34904863 Free PMC article.

9

A unified and simple medium for growing model methanogens.

Dzofou Ngoumelah D, Harnisch F, Sulheim S, Heggeset TMB, Aune IH, Wentzel A, Kretzschmar J. Dzofou Ngoumelah D, et al. Among authors: sulheim s. Front Microbiol. 2023 Jan 10;13:1046260. doi: 10.3389/fmicb.2022.1046260. eCollection 2022. Front Microbiol. 2023. PMID: 36704566 Free PMC article.

10

Breaking down microbial hierarchies.

Sulheim S, Mitri S. Sulheim S, et al. Trends Microbiol. 2023 May;31(5):426-427. doi: 10.1016/j.tim.2023.02.014. Epub 2023 Mar 20. Trends Microbiol. 2023. PMID: 36935220 Free article.

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