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Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil.
Faria NR, Mellan TA, Whittaker C, Claro IM, Candido DDS, Mishra S, Crispim MAE, Sales FC, Hawryluk I, McCrone JT, Hulswit RJG, Franco LAM, Ramundo MS, de Jesus JG, Andrade PS, Coletti TM, Ferreira GM, Silva CAM, Manuli ER, Pereira RHM, Peixoto PS, Kraemer MU, Gaburo N Jr, Camilo CDC, Hoeltgebaum H, Souza WM, Rocha EC, de Souza LM, de Pinho MC, Araujo LJT, Malta FSV, de Lima AB, Silva JDP, Zauli DAG, de S Ferreira AC, Schnekenberg RP, Laydon DJ, Walker PGT, Schlüter HM, Dos Santos ALP, Vidal MS, Del Caro VS, Filho RMF, Dos Santos HM, Aguiar RS, Modena JLP, Nelson B, Hay JA, Monod M, Miscouridou X, Coupland H, Sonabend R, Vollmer M, Gandy A, Suchard MA, Bowden TA, Pond SLK, Wu CH, Ratmann O, Ferguson NM, Dye C, Loman NJ, Lemey P, Rambaut A, Fraiji NA, Carvalho MDPSS, Pybus OG, Flaxman S, Bhatt S, Sabino EC. Faria NR, et al. Among authors: suchard ma. medRxiv [Preprint]. 2021 Mar 3:2021.02.26.21252554. doi: 10.1101/2021.02.26.21252554. medRxiv. 2021. PMID: 33688664 Free PMC article. Updated. Preprint.
Many-core algorithms for statistical phylogenetics.
Suchard MA, Rambaut A. Suchard MA, et al. Bioinformatics. 2009 Jun 1;25(11):1370-6. doi: 10.1093/bioinformatics/btp244. Epub 2009 Apr 15. Bioinformatics. 2009. PMID: 19369496 Free PMC article.
Bayesian phylogeography finds its roots.
Lemey P, Rambaut A, Drummond AJ, Suchard MA. Lemey P, et al. Among authors: suchard ma. PLoS Comput Biol. 2009 Sep;5(9):e1000520. doi: 10.1371/journal.pcbi.1000520. Epub 2009 Sep 25. PLoS Comput Biol. 2009. PMID: 19779555 Free PMC article.
A Bayesian phylogenetic method to estimate unknown sequence ages.
Shapiro B, Ho SY, Drummond AJ, Suchard MA, Pybus OG, Rambaut A. Shapiro B, et al. Among authors: suchard ma. Mol Biol Evol. 2011 Feb;28(2):879-87. doi: 10.1093/molbev/msq262. Epub 2010 Oct 1. Mol Biol Evol. 2011. PMID: 20889726 Free PMC article.
SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics.
Bielejec F, Rambaut A, Suchard MA, Lemey P. Bielejec F, et al. Among authors: suchard ma. Bioinformatics. 2011 Oct 15;27(20):2910-2. doi: 10.1093/bioinformatics/btr481. Epub 2011 Sep 11. Bioinformatics. 2011. PMID: 21911333 Free PMC article.
Toward a quantitative understanding of viral phylogeography.
Faria NR, Suchard MA, Rambaut A, Lemey P. Faria NR, et al. Among authors: suchard ma. Curr Opin Virol. 2011 Nov;1(5):423-9. doi: 10.1016/j.coviro.2011.10.003. Epub 2011 Oct 28. Curr Opin Virol. 2011. PMID: 22440846 Free PMC article. Review.
352 results