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Benchmark datasets for SARS-CoV-2 surveillance bioinformatics.
Xiaoli L, Hagey JV, Park DJ, Gulvik CA, Young EL, Alikhan NF, Lawsin A, Hassell N, Knipe K, Oakeson KF, Retchless AC, Shakya M, Lo CC, Chain P, Page AJ, Metcalf BJ, Su M, Rowell J, Vidyaprakash E, Paden CR, Huang AD, Roellig D, Patel K, Winglee K, Weigand MR, Katz LS. Xiaoli L, et al. Among authors: su m. PeerJ. 2022 Sep 5;10:e13821. doi: 10.7717/peerj.13821. eCollection 2022. PeerJ. 2022. PMID: 36093336 Free PMC article.
Notes from the Field: Epidemiologic Characteristics of SARS-CoV-2 Recombinant Variant XBB.1.5 - New York City, November 1, 2022-January 4, 2023.
Luoma E, Rohrer R, Parton H, Hughes S, Omoregie E, Taki F, Wang JC, Akther S, Amin H, Chang C, Cheng I, Di Lonardo S, Eddy M, Firestein L, Li W, Su M, Lee EH. Luoma E, et al. Among authors: su m. MMWR Morb Mortal Wkly Rep. 2023 Feb 24;72(8):212-214. doi: 10.15585/mmwr.mm7208a4. MMWR Morb Mortal Wkly Rep. 2023. PMID: 36821721 Free PMC article. No abstract available.
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method.
de Bernardi Schneider A, Su M, Hinrichs AS, Wang J, Amin H, Bell J, Wadford DA, O'Toole Á, Scher E, Perry MD, Turakhia Y, De Maio N, Hughes S, Corbett-Detig R. de Bernardi Schneider A, et al. Among authors: su m. Virus Evol. 2024 Jan 11;10(1):vead085. doi: 10.1093/ve/vead085. eCollection 2024. Virus Evol. 2024. PMID: 38361813 Free PMC article.
5,011 results