Stupnikov A - Search Results

1

scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprinting.

Akhtyamov P, Shaheen L, Raevskiy M, Stupnikov A, Medvedeva YA. Akhtyamov P, et al. Among authors: stupnikov a. Brief Bioinform. 2023 Nov 22;25(1):bbad447. doi: 10.1093/bib/bbad447. Brief Bioinform. 2023. PMID: 38084919 Free PMC article.

2

In Silico Drug Repurposing in Multiple Sclerosis Using scRNA-Seq Data.

Shevtsov A, Raevskiy M, Stupnikov A, Medvedeva Y. Shevtsov A, et al. Among authors: stupnikov a. Int J Mol Sci. 2023 Jan 4;24(2):985. doi: 10.3390/ijms24020985. Int J Mol Sci. 2023. PMID: 36674506 Free PMC article.

3

Assessing the Differential Methylation Analysis Quality for Microarray and NGS Platforms.

Budkina A, Medvedeva YA, Stupnikov A. Budkina A, et al. Among authors: stupnikov a. Int J Mol Sci. 2023 May 11;24(10):8591. doi: 10.3390/ijms24108591. Int J Mol Sci. 2023. PMID: 37239934 Free PMC article.

4

Hobotnica: exploring molecular signature quality.

Stupnikov A, Sizykh A, Budkina A, Favorov A, Afsari B, Wheelan S, Marchionni L, Medvedeva Y. Stupnikov A, et al. F1000Res. 2021 Dec 8;10:1260. doi: 10.12688/f1000research.74846.2. eCollection 2021. F1000Res. 2021. PMID: 36204675 Free PMC article.

5

Approaches for sRNA Analysis of Human RNA-Seq Data: Comparison, Benchmarking.

Bezuglov V, Stupnikov A, Skakov I, Shtratnikova V, Pilsner JR, Suvorov A, Sergeyev O. Bezuglov V, et al. Among authors: stupnikov a. Int J Mol Sci. 2023 Feb 20;24(4):4195. doi: 10.3390/ijms24044195. Int J Mol Sci. 2023. PMID: 36835604 Free PMC article.

6

Robustness of differential gene expression analysis of RNA-seq.

Stupnikov A, McInerney CE, Savage KI, McIntosh SA, Emmert-Streib F, Kennedy R, Salto-Tellez M, Prise KM, McArt DG. Stupnikov A, et al. Comput Struct Biotechnol J. 2021 May 26;19:3470-3481. doi: 10.1016/j.csbj.2021.05.040. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34188784 Free PMC article.

7

samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files.

Stupnikov A, Tripathi S, de Matos Simoes R, McArt D, Salto-Tellez M, Glazko G, Dehmer M, Emmert-Streib F. Stupnikov A, et al. Bioinformatics. 2016 Nov 1;32(21):3345-3347. doi: 10.1093/bioinformatics/btw475. Epub 2016 Jul 10. Bioinformatics. 2016. PMID: 27402900

8

ITAS: Integrated Transcript Annotation for Small RNA.

Stupnikov A, Bezuglov V, Skakov I, Shtratnikova V, Pilsner JR, Suvorov A, Sergeyev O. Stupnikov A, et al. Noncoding RNA. 2022 May 2;8(3):30. doi: 10.3390/ncrna8030030. Noncoding RNA. 2022. PMID: 35645337 Free PMC article.

9

Star-Shaped Polydimethylsiloxanes with Organocyclotetrasilsesquioxane Branching-Out Centers: Synthesis and Properties.

Dyuzhikova YS, Anisimov AA, Peregudov AS, Buzin MI, Nikiforova GG, Vasil'ev VG, Kostrov SA, Buzin AI, Stupnikov AA, Malakhova YN, Shchegolikhina OI, Muzafarov AM. Dyuzhikova YS, et al. Among authors: stupnikov aa. Polymers (Basel). 2022 Jan 12;14(2):285. doi: 10.3390/polym14020285. Polymers (Basel). 2022. PMID: 35054699 Free PMC article.

10

Clinically Actionable Insights into Initial and Matched Recurrent Glioblastomas to Inform Novel Treatment Approaches.

Ellis HP, McInerney CE, Schrimpf D, Sahm F, Stupnikov A, Wadsley M, Wragg C, White P, Prise KM, McArt DG, Kurian KM. Ellis HP, et al. Among authors: stupnikov a. J Oncol. 2019 Dec 31;2019:4878547. doi: 10.1155/2019/4878547. eCollection 2019. J Oncol. 2019. PMID: 32082376 Free PMC article.

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