Stephens R - Search Results

1

Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences.

Tao Y, Xi S, Shan J, Maunakea A, Che A, Briones V, Lee EY, Geiman T, Huang J, Stephens R, Leighty RM, Zhao K, Muegge K. Tao Y, et al. Among authors: stephens r. Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5626-31. doi: 10.1073/pnas.1017000108. Epub 2011 Mar 22. Proc Natl Acad Sci U S A. 2011. PMID: 21427231 Free PMC article.

2

Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis.

Yi M, Mudunuri U, Che A, Stephens RM. Yi M, et al. BMC Bioinformatics. 2009 Jun 29;10:200. doi: 10.1186/1471-2105-10-200. BMC Bioinformatics. 2009. PMID: 19563622 Free PMC article.

3

bioDBnet: the biological database network.

Mudunuri U, Che A, Yi M, Stephens RM. Mudunuri U, et al. Bioinformatics. 2009 Feb 15;25(4):555-6. doi: 10.1093/bioinformatics/btn654. Epub 2009 Jan 7. Bioinformatics. 2009. PMID: 19129209 Free PMC article.

4

Knowledge and theme discovery across very large biological data sets using distributed queries: a prototype combining unstructured and structured data.

Mudunuri US, Khouja M, Repetski S, Venkataraman G, Che A, Luke BT, Girard FP, Stephens RM. Mudunuri US, et al. PLoS One. 2013 Dec 2;8(12):e80503. doi: 10.1371/journal.pone.0080503. eCollection 2013. PLoS One. 2013. PMID: 24312478 Free PMC article.

5

Long-range enhancers on 8q24 regulate c-Myc.

Sotelo J, Esposito D, Duhagon MA, Banfield K, Mehalko J, Liao H, Stephens RM, Harris TJ, Munroe DJ, Wu X. Sotelo J, et al. Among authors: stephens rm. Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):3001-5. doi: 10.1073/pnas.0906067107. Epub 2010 Jan 26. Proc Natl Acad Sci U S A. 2010. PMID: 20133699 Free PMC article.

6

KRAS G13D sensitivity to neurofibromin-mediated GTP hydrolysis.

Rabara D, Tran TH, Dharmaiah S, Stephens RM, McCormick F, Simanshu DK, Holderfield M. Rabara D, et al. Proc Natl Acad Sci U S A. 2019 Oct 29;116(44):22122-22131. doi: 10.1073/pnas.1908353116. Epub 2019 Oct 14. Proc Natl Acad Sci U S A. 2019. PMID: 31611389 Free PMC article.

7

Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia.

Takala-Harrison S, Clark TG, Jacob CG, Cummings MP, Miotto O, Dondorp AM, Fukuda MM, Nosten F, Noedl H, Imwong M, Bethell D, Se Y, Lon C, Tyner SD, Saunders DL, Socheat D, Ariey F, Phyo AP, Starzengruber P, Fuehrer HP, Swoboda P, Stepniewska K, Flegg J, Arze C, Cerqueira GC, Silva JC, Ricklefs SM, Porcella SF, Stephens RM, Adams M, Kenefic LJ, Campino S, Auburn S, MacInnis B, Kwiatkowski DP, Su XZ, White NJ, Ringwald P, Plowe CV. Takala-Harrison S, et al. Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):240-5. doi: 10.1073/pnas.1211205110. Epub 2012 Dec 17. Proc Natl Acad Sci U S A. 2013. PMID: 23248304 Free PMC article.

8

Chromatin-associated genes protect the yeast genome from Ty1 insertional mutagenesis.

Nyswaner KM, Checkley MA, Yi M, Stephens RM, Garfinkel DJ. Nyswaner KM, et al. Genetics. 2008 Jan;178(1):197-214. doi: 10.1534/genetics.107.082602. Genetics. 2008. PMID: 18202368 Free PMC article.

9

Performance comparison of SNP detection tools with illumina exome sequencing data--an assessment using both family pedigree information and sample-matched SNP array data.

Yi M, Zhao Y, Jia L, He M, Kebebew E, Stephens RM. Yi M, et al. Nucleic Acids Res. 2014 Jul;42(12):e101. doi: 10.1093/nar/gku392. Epub 2014 May 15. Nucleic Acids Res. 2014. PMID: 24831545 Free PMC article.

10

SLEPR: a sample-level enrichment-based pathway ranking method -- seeking biological themes through pathway-level consistency.

Yi M, Stephens RM. Yi M, et al. PLoS One. 2008 Sep 26;3(9):e3288. doi: 10.1371/journal.pone.0003288. PLoS One. 2008. PMID: 18818771 Free PMC article.

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