Stadler T - Search Results

1

Spread of a SARS-CoV-2 variant through Europe in the summer of 2020.

Hodcroft EB, Zuber M, Nadeau S, Vaughan TG, Crawford KHD, Althaus CL, Reichmuth ML, Bowen JE, Walls AC, Corti D, Bloom JD, Veesler D, Mateo D, Hernando A, Comas I, González-Candelas F; SeqCOVID-SPAIN consortium; Stadler T, Neher RA. Hodcroft EB, et al. Among authors: stadler t. Nature. 2021 Jul;595(7869):707-712. doi: 10.1038/s41586-021-03677-y. Epub 2021 Jun 7. Nature. 2021. PMID: 34098568

2

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model.

Kühnert D, Stadler T, Vaughan TG, Drummond AJ. Kühnert D, et al. Among authors: stadler t. J R Soc Interface. 2014 Feb 26;11(94):20131106. doi: 10.1098/rsif.2013.1106. Print 2014 May 6. J R Soc Interface. 2014. PMID: 24573331 Free PMC article.

3

How well can the exponential-growth coalescent approximate constant-rate birth-death population dynamics?

Stadler T, Vaughan TG, Gavryushkin A, Guindon S, Kühnert D, Leventhal GE, Drummond AJ. Stadler T, et al. Proc Biol Sci. 2015 May 7;282(1806):20150420. doi: 10.1098/rspb.2015.0420. Proc Biol Sci. 2015. PMID: 25876846 Free PMC article.

4

Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data.

Kühnert D, Stadler T, Vaughan TG, Drummond AJ. Kühnert D, et al. Among authors: stadler t. Mol Biol Evol. 2016 Aug;33(8):2102-16. doi: 10.1093/molbev/msw064. Epub 2016 Apr 9. Mol Biol Evol. 2016. PMID: 27189573 Free PMC article.

5

Tuberculosis outbreak investigation using phylodynamic analysis.

Kühnert D, Coscolla M, Brites D, Stucki D, Metcalfe J, Fenner L, Gagneux S, Stadler T. Kühnert D, et al. Among authors: stadler t. Epidemics. 2018 Dec;25:47-53. doi: 10.1016/j.epidem.2018.05.004. Epub 2018 May 22. Epidemics. 2018. PMID: 29880306 Free PMC article.

6

Detection of HIV transmission clusters from phylogenetic trees using a multi-state birth-death model.

Barido-Sottani J, Vaughan TG, Stadler T. Barido-Sottani J, et al. Among authors: stadler t. J R Soc Interface. 2018 Sep;15(146):20180512. doi: 10.1098/rsif.2018.0512. J R Soc Interface. 2018. PMID: 30185544 Free PMC article.

7

Evaluation of two workflows for whole genome sequencing-based typing of influenza A viruses.

Wüthrich D, Lang D, Müller NF, Neher RA, Stadler T, Egli A. Wüthrich D, et al. Among authors: stadler t. J Virol Methods. 2019 Apr;266:30-33. doi: 10.1016/j.jviromet.2019.01.009. Epub 2019 Jan 21. J Virol Methods. 2019. PMID: 30677464 Free article.

8

Exploring the power of Bayesian birth-death skyline models to detect mass extinction events from phylogenies with only extant taxa.

Culshaw V, Stadler T, Sanmartín I. Culshaw V, et al. Among authors: stadler t. Evolution. 2019 Jun;73(6):1133-1150. doi: 10.1111/evo.13753. Epub 2019 May 9. Evolution. 2019. PMID: 31017656 Free PMC article.

9

Estimating Epidemic Incidence and Prevalence from Genomic Data.

Vaughan TG, Leventhal GE, Rasmussen DA, Drummond AJ, Welch D, Stadler T. Vaughan TG, et al. Among authors: stadler t. Mol Biol Evol. 2019 Aug 1;36(8):1804-1816. doi: 10.1093/molbev/msz106. Mol Biol Evol. 2019. PMID: 31058982 Free PMC article.

10

The probability distribution of the reconstructed phylogenetic tree with occurrence data.

Gupta A, Manceau M, Vaughan T, Khammash M, Stadler T. Gupta A, et al. Among authors: stadler t. J Theor Biol. 2020 Mar 7;488:110115. doi: 10.1016/j.jtbi.2019.110115. Epub 2019 Dec 19. J Theor Biol. 2020. PMID: 31866392

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