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Phylodynamics for cell biologists.
Stadler T, Pybus OG, Stumpf MPH. Stadler T, et al. Science. 2021 Jan 15;371(6526):eaah6266. doi: 10.1126/science.aah6266. Science. 2021. PMID: 33446527 Review.
Taming the BEAST-A Community Teaching Material Resource for BEAST 2.
Barido-Sottani J, Bošková V, Plessis LD, Kühnert D, Magnus C, Mitov V, Müller NF, PecErska J, Rasmussen DA, Zhang C, Drummond AJ, Heath TA, Pybus OG, Vaughan TG, Stadler T. Barido-Sottani J, et al. Among authors: stadler t. Syst Biol. 2018 Jan 1;67(1):170-174. doi: 10.1093/sysbio/syx060. Syst Biol. 2018. PMID: 28673048 Free PMC article.
On the statistical analysis of single cell lineage trees.
Stadler T, Skylaki S, D Kokkaliaris K, Schroeder T. Stadler T, et al. J Theor Biol. 2018 Feb 14;439:160-165. doi: 10.1016/j.jtbi.2017.11.023. Epub 2017 Dec 5. J Theor Biol. 2018. PMID: 29208470 Free PMC article.
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.
Alm E, Broberg EK, Connor T, Hodcroft EB, Komissarov AB, Maurer-Stroh S, Melidou A, Neher RA, O'Toole Á, Pereyaslov D; WHO European Region sequencing laboratories and GISAID EpiCoV group; WHO European Region sequencing laboratories and GISAID EpiCoV group*. Alm E, et al. Euro Surveill. 2020 Aug;25(32):2001410. doi: 10.2807/1560-7917.ES.2020.25.32.2001410. Euro Surveill. 2020. PMID: 32794443 Free PMC article.
Phylodynamics on local sexual contact networks.
Rasmussen DA, Kouyos R, Günthard HF, Stadler T. Rasmussen DA, et al. Among authors: stadler t. PLoS Comput Biol. 2017 Mar 28;13(3):e1005448. doi: 10.1371/journal.pcbi.1005448. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28350852 Free PMC article.
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics.
Kühnert D, Kouyos R, Shirreff G, Pečerska J, Scherrer AU, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Stadler T, Bonhoeffer S; Swiss HIV Cohort Study. Kühnert D, et al. Among authors: stadler t. PLoS Pathog. 2018 Feb 20;14(2):e1006895. doi: 10.1371/journal.ppat.1006895. eCollection 2018 Feb. PLoS Pathog. 2018. PMID: 29462208 Free PMC article.
A transmissible cancer shifts from emergence to endemism in Tasmanian devils.
Patton AH, Lawrance MF, Margres MJ, Kozakiewicz CP, Hamede R, Ruiz-Aravena M, Hamilton DG, Comte S, Ricci LE, Taylor RL, Stadler T, Leaché A, McCallum H, Jones ME, Hohenlohe PA, Storfer A. Patton AH, et al. Among authors: stadler t. Science. 2020 Dec 11;370(6522):eabb9772. doi: 10.1126/science.abb9772. Science. 2020. PMID: 33303589
271 results