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Interoperable and scalable data analysis with microservices: applications in metabolomics.
Emami Khoonsari P, Moreno P, Bergmann S, Burman J, Capuccini M, Carone M, Cascante M, de Atauri P, Foguet C, Gonzalez-Beltran AN, Hankemeier T, Haug K, He S, Herman S, Johnson D, Kale N, Larsson A, Neumann S, Peters K, Pireddu L, Rocca-Serra P, Roger P, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Schober D, Selivanov V, Thévenot EA, van Vliet M, Zanetti G, Steinbeck C, Kultima K, Spjuth O. Emami Khoonsari P, et al. Among authors: spjuth o. Bioinformatics. 2019 Oct 1;35(19):3752-3760. doi: 10.1093/bioinformatics/btz160. Bioinformatics. 2019. PMID: 30851093 Free PMC article.
The LCB Data Warehouse.
Ameur A, Yankovski V, Enroth S, Spjuth O, Komorowski J. Ameur A, et al. Among authors: spjuth o. Bioinformatics. 2006 Apr 15;22(8):1024-6. doi: 10.1093/bioinformatics/btl036. Epub 2006 Feb 2. Bioinformatics. 2006. PMID: 16455749
Bioclipse: an open source workbench for chemo- and bioinformatics.
Spjuth O, Helmus T, Willighagen EL, Kuhn S, Eklund M, Wagener J, Murray-Rust P, Steinbeck C, Wikberg JE. Spjuth O, et al. BMC Bioinformatics. 2007 Feb 22;8:59. doi: 10.1186/1471-2105-8-59. BMC Bioinformatics. 2007. PMID: 17316423 Free PMC article.
Bioclipse 2: a scriptable integration platform for the life sciences.
Spjuth O, Alvarsson J, Berg A, Eklund M, Kuhn S, Mäsak C, Torrance G, Wagener J, Willighagen EL, Steinbeck C, Wikberg JE. Spjuth O, et al. BMC Bioinformatics. 2009 Dec 3;10:397. doi: 10.1186/1471-2105-10-397. BMC Bioinformatics. 2009. PMID: 19958528 Free PMC article.
Experiences with workflows for automating data-intensive bioinformatics.
Spjuth O, Bongcam-Rudloff E, Hernández GC, Forer L, Giovacchini M, Guimera RV, Kallio A, Korpelainen E, Kańduła MM, Krachunov M, Kreil DP, Kulev O, Łabaj PP, Lampa S, Pireddu L, Schönherr S, Siretskiy A, Vassilev D. Spjuth O, et al. Biol Direct. 2015 Aug 19;10:43. doi: 10.1186/s13062-015-0071-8. Biol Direct. 2015. PMID: 26282399 Free PMC article.
110 results