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Community-led, integrated, reproducible multi-omics with anvi'o.
Eren AM, Kiefl E, Shaiber A, Veseli I, Miller SE, Schechter MS, Fink I, Pan JN, Yousef M, Fogarty EC, Trigodet F, Watson AR, Esen ÖC, Moore RM, Clayssen Q, Lee MD, Kivenson V, Graham ED, Merrill BD, Karkman A, Blankenberg D, Eppley JM, Sjödin A, Scott JJ, Vázquez-Campos X, McKay LJ, McDaniel EA, Stevens SLR, Anderson RE, Fuessel J, Fernandez-Guerra A, Maignien L, Delmont TO, Willis AD. Eren AM, et al. Among authors: sjodin a. Nat Microbiol. 2021 Jan;6(1):3-6. doi: 10.1038/s41564-020-00834-3. Nat Microbiol. 2021. PMID: 33349678 Free PMC article.
CanSNPer: a hierarchical genotype classifier of clonal pathogens.
Lärkeryd A, Myrtennäs K, Karlsson E, Dwibedi CK, Forsman M, Larsson P, Johansson A, Sjödin A. Lärkeryd A, et al. Among authors: sjodin a. Bioinformatics. 2014 Jun 15;30(12):1762-4. doi: 10.1093/bioinformatics/btu113. Epub 2014 Feb 25. Bioinformatics. 2014. PMID: 24574113
Accounting for Bacterial Overlap Between Raw Water Communities and Contaminating Sources Improves the Accuracy of Signature-Based Microbial Source Tracking.
Hägglund M, Bäckman S, Macellaro A, Lindgren P, Borgmästars E, Jacobsson K, Dryselius R, Stenberg P, Sjödin A, Forsman M, Ahlinder J. Hägglund M, et al. Among authors: sjodin a. Front Microbiol. 2018 Oct 2;9:2364. doi: 10.3389/fmicb.2018.02364. eCollection 2018. Front Microbiol. 2018. PMID: 30356843 Free PMC article.
496 results