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Whole genome sequencing of human Borrelia burgdorferi isolates reveals linked blocks of accessory genome elements located on plasmids and associated with human dissemination.
Lemieux JE, Huang W, Hill N, Cerar T, Freimark L, Hernandez S, Luban M, Maraspin V, Bogovič P, Ogrinc K, Ruzič-Sabljič E, Lapierre P, Lasek-Nesselquist E, Singh N, Iyer R, Liveris D, Reed KD, Leong JM, Branda JA, Steere AC, Wormser GP, Strle F, Sabeti PC, Schwartz I, Strle K. Lemieux JE, et al. Among authors: singh n. PLoS Pathog. 2023 Aug 31;19(8):e1011243. doi: 10.1371/journal.ppat.1011243. eCollection 2023 Aug. PLoS Pathog. 2023. PMID: 37651316 Free PMC article.
Whole-Genome Single-Nucleotide Polymorphism (SNP) Analysis Applied Directly to Stool for Genotyping Shiga Toxin-Producing Escherichia coli: an Advanced Molecular Detection Method for Foodborne Disease Surveillance and Outbreak Tracking.
Singh N, Lapierre P, Quinlan TM, Halse TA, Wirth S, Dickinson MC, Lasek-Nesselquist E, Musser KA. Singh N, et al. J Clin Microbiol. 2019 Jun 25;57(7):e00307-19. doi: 10.1128/JCM.00307-19. Print 2019 Jul. J Clin Microbiol. 2019. PMID: 31068414 Free PMC article.
Impact of Candida auris Infection in a Neutropenic Murine Model.
Torres SR, Pichowicz A, Torres-Velez F, Song R, Singh N, Lasek-Nesselquist E, De Jesus M. Torres SR, et al. Among authors: singh n. Antimicrob Agents Chemother. 2020 Feb 21;64(3):e01625-19. doi: 10.1128/AAC.01625-19. Print 2020 Feb 21. Antimicrob Agents Chemother. 2020. PMID: 31818824 Free PMC article.
Comparative analysis of multiplexed PCR and short- and long-read whole genome sequencing to investigate a large Klebsiella pneumoniae outbreak in New York State.
Prussing C, Southwick K, Snavely E, Kidney A, Randall L, Sossei A, Dentinger L, Shushe O, Fernandez R, Haas W, Lapierre P, Singh N, Nazarian EJ, Musser KA, Mitchell K. Prussing C, et al. Among authors: singh n. Diagn Microbiol Infect Dis. 2022 Oct;104(2):115765. doi: 10.1016/j.diagmicrobio.2022.115765. Epub 2022 Jul 10. Diagn Microbiol Infect Dis. 2022. PMID: 35932600
Whole genome sequencing of Borrelia burgdorferi isolates reveals linked clusters of plasmid-borne accessory genome elements associated with virulence.
Lemieux JE, Huang W, Hill N, Cerar T, Freimark L, Hernandez S, Luban M, Maraspin V, Bogovic P, Ogrinc K, Ruzic-Sabljic E, Lapierre P, Lasek-Nesselquist E, Singh N, Iyer R, Liveris D, Reed KD, Leong JM, Branda JA, Steere AC, Wormser GP, Strle F, Sabeti PC, Schwartz I, Strle K. Lemieux JE, et al. Among authors: singh n. bioRxiv [Preprint]. 2023 Feb 27:2023.02.26.530159. doi: 10.1101/2023.02.26.530159. bioRxiv. 2023. PMID: 36909473 Free PMC article. Updated. Preprint.
Identification of regulatory targets for the bacterial Nus factor complex.
Baniulyte G, Singh N, Benoit C, Johnson R, Ferguson R, Paramo M, Stringer AM, Scott A, Lapierre P, Wade JT. Baniulyte G, et al. Among authors: singh n. Nat Commun. 2017 Dec 11;8(1):2027. doi: 10.1038/s41467-017-02124-9. Nat Commun. 2017. PMID: 29229908 Free PMC article.
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