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Complete Combinatorial Mutational Enumeration of a protein functional site enables sequence-landscape mapping and identifies highly-mutated variants that retain activity.
Colom MS, Vucinic J, Adolf-Bryfogle J, Bowman JW, Verel S, Moczygemba I, Schiex T, Simoncini D, Bahl CD. Colom MS, et al. Among authors: simoncini d. Res Sq [Preprint]. 2023 Sep 11:rs.3.rs-2248327. doi: 10.21203/rs.3.rs-2248327/v1. Res Sq. 2023. PMID: 36482980 Free PMC article. Preprint.
Artificial intelligence-based prediction models for acute myeloid leukemia using real-life data: A DATAML registry study.
Didi I, Alliot JM, Dumas PY, Vergez F, Tavitian S, Largeaud L, Bidet A, Rieu JB, Luquet I, Lechevalier N, Delabesse E, Sarry A, De Grande AC, Bérard E, Pigneux A, Récher C, Simoncini D, Bertoli S. Didi I, et al. Among authors: simoncini d. Leuk Res. 2024 Jan;136:107437. doi: 10.1016/j.leukres.2024.107437. Epub 2024 Jan 9. Leuk Res. 2024. PMID: 38215555 Free article.
Exploring the Intricate Links between Adenotonsillar Hypertrophy, Mouth Breathing, and Craniofacial Development in Children with Sleep-Disordered Breathing: Unraveling the Vicious Cycle.
Nosetti L, Zaffanello M, De Bernardi di Valserra F, Simoncini D, Beretta G, Guacci P, Piacentini G, Agosti M. Nosetti L, et al. Among authors: simoncini d. Children (Basel). 2023 Aug 21;10(8):1426. doi: 10.3390/children10081426. Children (Basel). 2023. PMID: 37628425 Free PMC article. Review.
GNE-related thrombocytopenia: evidence for a mutational hotspot in the ADP/substrate domain of the GNE bifunctional enzyme.
Bottega R, Marzollo A, Marinoni M, Athanasakis E, Persico I, Bianco AM, Faleschini M, Valencic E, Simoncini D, Rossini L, Corsolini F, La Bianca M, Robustelli G, Gabelli M, Agosti M, Biffi A, Grotto P, Bozzi V, Noris P, Burlina AB, D'Adamo AP, Tommasini A, Faletra F, Pastore A, Savoia A. Bottega R, et al. Among authors: simoncini d. Haematologica. 2022 Mar 1;107(3):750-754. doi: 10.3324/haematol.2021.279689. Haematologica. 2022. PMID: 34788986 Free PMC article. No abstract available.
Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
Yagi S, Padhi AK, Vucinic J, Barbe S, Schiex T, Nakagawa R, Simoncini D, Zhang KYJ, Tagami S. Yagi S, et al. Among authors: simoncini d. J Am Chem Soc. 2021 Oct 6;143(39):15998-16006. doi: 10.1021/jacs.1c05367. Epub 2021 Sep 24. J Am Chem Soc. 2021. PMID: 34559526
Positive multistate protein design.
Vucinic J, Simoncini D, Ruffini M, Barbe S, Schiex T. Vucinic J, et al. Among authors: simoncini d. Bioinformatics. 2020 Jan 1;36(1):122-130. doi: 10.1093/bioinformatics/btz497. Bioinformatics. 2020. PMID: 31199465 Free article.
Computational design of symmetrical eight-bladed β-propeller proteins.
Noguchi H, Addy C, Simoncini D, Wouters S, Mylemans B, Van Meervelt L, Schiex T, Zhang KYJ, Tame JRH, Voet ARD. Noguchi H, et al. Among authors: simoncini d. IUCrJ. 2019 Jan 1;6(Pt 1):46-55. doi: 10.1107/S205225251801480X. eCollection 2019 Jan 1. IUCrJ. 2019. PMID: 30713702 Free PMC article.
22 results