Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2003 1
2005 2
2006 7
2007 6
2008 5
2009 4
2010 8
2011 8
2012 7
2013 1
2014 2
2015 7
2016 3
2017 4
2018 6
2019 7
2020 17
2021 22
2022 11
2023 8
2024 3

Text availability

Article attribute

Article type

Publication date

Search Results

128 results

Results by year

Filters applied: . Clear all
Page 1
Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes.
Gand M, Navickaite I, Bartsch LJ, Grützke J, Overballe-Petersen S, Rasmussen A, Otani S, Michelacci V, Matamoros BR, González-Zorn B, Brouwer MSM, Di Marcantonio L, Bloemen B, Vanneste K, Roosens NHCJ, AbuOun M, De Keersmaecker SCJ. Gand M, et al. Among authors: de keersmaecker scj. Front Microbiol. 2024 Apr 4;15:1336532. doi: 10.3389/fmicb.2024.1336532. eCollection 2024. Front Microbiol. 2024. PMID: 38659981 Free PMC article.
Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling.
Buytaers FE, Verhaegen B, Van Nieuwenhuysen T, Roosens NHC, Vanneste K, Marchal K, De Keersmaecker SCJ. Buytaers FE, et al. Among authors: de keersmaecker scj. Front Microbiol. 2024 Mar 1;15:1330814. doi: 10.3389/fmicb.2024.1330814. eCollection 2024. Front Microbiol. 2024. PMID: 38495515 Free PMC article.
Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens.
Bogaerts B, Van den Bossche A, Verhaegen B, Delbrassinne L, Mattheus W, Nouws S, Godfroid M, Hoffman S, Roosens NHC, De Keersmaecker SCJ, Vanneste K. Bogaerts B, et al. Among authors: de keersmaecker scj. J Clin Microbiol. 2024 Mar 5:e0157623. doi: 10.1128/jcm.01576-23. Online ahead of print. J Clin Microbiol. 2024. PMID: 38441926 Free article.
Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing.
Bogaerts B, Fraiture MA, Huwaert A, Van Nieuwenhuysen T, Jacobs B, Van Hoorde K, De Keersmaecker SCJ, Roosens NHC, Vanneste K. Bogaerts B, et al. Among authors: de keersmaecker scj. Front Microbiol. 2023 Jun 21;14:1173594. doi: 10.3389/fmicb.2023.1173594. eCollection 2023. Front Microbiol. 2023. PMID: 37415815 Free PMC article.
Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium.
Berbers B, Vanneste K, Roosens NHCJ, Marchal K, Ceyssens PJ, De Keersmaecker SCJ. Berbers B, et al. Among authors: de keersmaecker scj. Microb Genom. 2023 Jan;9(1):mgen000925. doi: 10.1099/mgen.0.000925. Microb Genom. 2023. PMID: 36748573 Free PMC article.
128 results