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Automated whole-genome multiple alignment of rat, mouse, and human.
Brudno M, Poliakov A, Salamov A, Cooper GM, Sidow A, Rubin EM, Solovyev V, Batzoglou S, Dubchak I. Brudno M, et al. Among authors: sidow a. Genome Res. 2004 Apr;14(4):685-92. doi: 10.1101/gr.2067704. Genome Res. 2004. PMID: 15060011 Free PMC article.
Distribution and intensity of constraint in mammalian genomic sequence.
Cooper GM, Stone EA, Asimenos G; NISC Comparative Sequencing Program; Green ED, Batzoglou S, Sidow A. Cooper GM, et al. Among authors: sidow a. Genome Res. 2005 Jul;15(7):901-13. doi: 10.1101/gr.3577405. Epub 2005 Jun 17. Genome Res. 2005. PMID: 15965027 Free PMC article.
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.
Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou M, Taylor J, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Brown JB, Bickel P, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Stone EA, Rosenbloom KR, Kent WJ, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Hinrichs A, Trumbower H, Clawson H, Zweig A, Kuhn RM, Barber G, Harte R, Karolchik D, Field MA, Moore RA, Matthewson CA, Schein JE, Marra MA, Antonarakis SE, Batzoglou S, Goldman N, Hardison R, Haussler D, Miller W, Pachter L, Green ED, Sidow A. Margulies EH, et al. Among authors: sidow a. Genome Res. 2007 Jun;17(6):760-74. doi: 10.1101/gr.6034307. Genome Res. 2007. PMID: 17567995 Free PMC article.
Mammalian comparative sequence analysis of the Agrp locus.
Kaelin CB, Cooper GM, Sidow A, Barsh GS. Kaelin CB, et al. Among authors: sidow a. PLoS One. 2007 Aug 8;2(8):e702. doi: 10.1371/journal.pone.0000702. PLoS One. 2007. PMID: 17684549 Free PMC article.
88 results