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An evolution-based framework for describing human gut bacteria.
Doran BA, Chen RY, Giba H, Behera V, Barat B, Sundararajan A, Lin H, Sidebottom A, Pamer EG, Raman AS. Doran BA, et al. Among authors: sidebottom a. bioRxiv [Preprint]. 2023 Dec 5:2023.12.04.569969. doi: 10.1101/2023.12.04.569969. bioRxiv. 2023. PMID: 38105970 Free PMC article. Preprint.
Immunomodulatory fecal metabolites are associated with mortality in COVID-19 patients with respiratory failure.
Stutz MR, Dylla NP, Pearson SD, Lecompte-Osorio P, Nayak R, Khalid M, Adler E, Boissiere J, Lin H, Leiter W, Little J, Rose A, Moran D, Mullowney MW, Wolfe KS, Lehmann C, Odenwald M, De La Cruz M, Giurcanu M, Pohlman AS, Hall JB, Chaubard JL, Sundararajan A, Sidebottom A, Kress JP, Pamer EG, Patel BK. Stutz MR, et al. Among authors: sidebottom a. Nat Commun. 2022 Nov 3;13(1):6615. doi: 10.1038/s41467-022-34260-2. Nat Commun. 2022. PMID: 36329015 Free PMC article.
Bifidobacteria metabolize lactulose to optimize gut metabolites and prevent systemic infection in patients with liver disease.
Odenwald MA, Lin H, Lehmann C, Dylla NP, Cole CG, Mostad JD, Pappas TE, Ramaswamy R, Moran A, Hutchison AL, Stutz MR, Dela Cruz M, Adler E, Boissiere J, Khalid M, Cantoral J, Haro F, Oliveira RA, Waligurski E, Cotter TG, Light SH, Beavis KG, Sundararajan A, Sidebottom AM, Reddy KG, Paul S, Pillai A, Te HS, Rinella ME, Charlton MR, Pamer EG, Aronsohn AI. Odenwald MA, et al. Among authors: sidebottom am. Nat Microbiol. 2023 Nov;8(11):2033-2049. doi: 10.1038/s41564-023-01493-w. Epub 2023 Oct 16. Nat Microbiol. 2023. PMID: 37845315 Free PMC article.
Fecal metabolite profiling identifies liver transplant recipients at risk for postoperative infection.
Lehmann CJ, Dylla NP, Odenwald M, Nayak R, Khalid M, Boissiere J, Cantoral J, Adler E, Stutz MR, Dela Cruz M, Moran A, Lin H, Ramaswamy R, Sundararajan A, Sidebottom AM, Little J, Pamer EG, Aronsohn A, Fung J, Baker TB, Kacha A. Lehmann CJ, et al. Among authors: sidebottom am. Cell Host Microbe. 2024 Jan 10;32(1):117-130.e4. doi: 10.1016/j.chom.2023.11.016. Epub 2023 Dec 15. Cell Host Microbe. 2024. PMID: 38103544
Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration.
Little AS, Younker IT, Schechter MS, Bernardino PN, Méheust R, Stemczynski J, Scorza K, Mullowney MW, Sharan D, Waligurski E, Smith R, Ramanswamy R, Leiter W, Moran D, McMillin M, Odenwald MA, Iavarone AT, Sidebottom AM, Sundararajan A, Pamer EG, Eren AM, Light SH. Little AS, et al. Among authors: sidebottom am. Nat Microbiol. 2024 Jan;9(1):55-69. doi: 10.1038/s41564-023-01560-2. Epub 2024 Jan 4. Nat Microbiol. 2024. PMID: 38177297
Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species and strain level diversity and evolution.
Zhang ZJ, Cole CG, Coyne MJ, Lin H, Dylla N, Smith RC, Waligurski E, Ramaswamy R, Woodson C, Burgo V, Little JC, Moran D, Rose A, McMillin M, McSpadden E, Sundararajan A, Sidebottom AM, Pamer EG, Comstock LE. Zhang ZJ, et al. Among authors: sidebottom am. bioRxiv [Preprint]. 2024 Mar 9:2024.03.08.584156. doi: 10.1101/2024.03.08.584156. bioRxiv. 2024. PMID: 38496653 Free PMC article. Preprint.
Microbially-catalyzed conjugation of GABA and tyramine to bile acids.
Mullowney MW, Fiebig A, Schnizlein MK, McMillin M, Rose AR, Koval J, Rubin D, Dalal S, Sogin ML, Chang EB, Sidebottom AM, Crosson S. Mullowney MW, et al. Among authors: sidebottom am. bioRxiv [Preprint]. 2023 Dec 13:2023.09.25.559407. doi: 10.1101/2023.09.25.559407. bioRxiv. 2023. PMID: 37808758 Free PMC article. Updated. Preprint.
The Host-specific Microbiota is Required for Diet-Specific Metabolic Homeostasis.
Fei N, Xie B, Long TJ, StGeorge M, Tan A, Manzoor S, Sidebottom AM, Spedale M, Theriault BR, Sulakhe D, Chang EB. Fei N, et al. Among authors: sidebottom am. bioRxiv [Preprint]. 2023 Nov 6:2023.11.05.565654. doi: 10.1101/2023.11.05.565654. bioRxiv. 2023. PMID: 37986759 Free PMC article. Preprint.
Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma.
Srinath A, Xie B, Li Y, Sone JY, Romanos S, Chen C, Sharma A, Polster S, Dorrestein PC, Weldon KC, DeBiasse D, Moore T, Lightle R, Koskimäki J, Zhang D, Stadnik A, Piedad K, Hagan M, Shkoukani A, Carrión-Penagos J, Bi D, Shen L, Shenkar R, Ji Y, Sidebottom A, Pamer E, Gilbert JA, Kahn ML, D'Souza M, Sulakhe D, Awad IA, Girard R. Srinath A, et al. Among authors: sidebottom a. Commun Med (Lond). 2023 Mar 3;3(1):35. doi: 10.1038/s43856-023-00265-1. Commun Med (Lond). 2023. PMID: 36869161 Free PMC article.
Oral Metformin Inhibits Choroidal Neovascularization by Modulating the Gut-Retina Axis.
Zhang JY, Xiao J, Xie B, Barba H, Boachie-Mensah M, Shah RN, Nadeem U, Spedale M, Dylla N, Lin H, Sidebottom AM, D'Souza M, Theriault B, Sulakhe D, Chang EB, Skondra D. Zhang JY, et al. Among authors: sidebottom am. Invest Ophthalmol Vis Sci. 2023 Dec 1;64(15):21. doi: 10.1167/iovs.64.15.21. Invest Ophthalmol Vis Sci. 2023. PMID: 38108689 Free PMC article.
182 results