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Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.
Geoghegan JL, Tan le V, Kühnert D, Halpin RA, Lin X, Simenauer A, Akopov A, Das SR, Stockwell TB, Shrivastava S, Ngoc NM, Uyen le TT, Tuyen NT, Thanh TT, Hang VT, Qui PT, Hung NT, Khanh TH, Thinh le Q, Nhan le NT, Van HM, Viet do C, Tuan HM, Viet HL, Hien TT, Chau NV, Thwaites G, Grenfell BT, Stadler T, Wentworth DE, Holmes EC, Van Doorn HR. Geoghegan JL, et al. Among authors: shrivastava s. J Virol. 2015 Sep;89(17):8871-9. doi: 10.1128/JVI.00706-15. Epub 2015 Jun 17. J Virol. 2015. PMID: 26085170 Free PMC article.
Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene.
Schobel SA, Stucker KM, Moore ML, Anderson LJ, Larkin EK, Shankar J, Bera J, Puri V, Shilts MH, Rosas-Salazar C, Halpin RA, Fedorova N, Shrivastava S, Stockwell TB, Peebles RS, Hartert TV, Das SR. Schobel SA, et al. Among authors: shrivastava s. Sci Rep. 2016 May 23;6:26311. doi: 10.1038/srep26311. Sci Rep. 2016. PMID: 27212633 Free PMC article.
Degenerate primer design for highly variable genomes.
Li K, Shrivastava S, Stockwell TB. Li K, et al. Among authors: shrivastava s. Methods Mol Biol. 2015;1275:103-15. doi: 10.1007/978-1-4939-2365-6_7. Methods Mol Biol. 2015. PMID: 25697654
Isolation, propagation, genome analysis and epidemiology of HKU1 betacoronaviruses.
Dominguez SR, Shrivastava S, Berglund A, Qian Z, Góes LGB, Halpin RA, Fedorova N, Ransier A, Weston PA, Durigon EL, Jerez JA, Robinson CC, Town CD, Holmes KV. Dominguez SR, et al. Among authors: shrivastava s. J Gen Virol. 2014 Apr;95(Pt 4):836-848. doi: 10.1099/vir.0.059832-0. Epub 2014 Jan 6. J Gen Virol. 2014. PMID: 24394697 Free PMC article.
Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic.
Tan Y, Pickett BE, Shrivastava S, Gresh L, Balmaseda A, Amedeo P, Hu L, Puri V, Fedorova NB, Halpin RA, LaPointe MP, Cone MR, Heberlein-Larson L, Kramer LD, Ciota AT, Gordon A, Shabman RS, Das SR, Harris E. Tan Y, et al. Among authors: shrivastava s. PLoS Negl Trop Dis. 2018 Jul 30;12(7):e0006670. doi: 10.1371/journal.pntd.0006670. eCollection 2018 Jul. PLoS Negl Trop Dis. 2018. PMID: 30059496 Free PMC article.
Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa.
Nyaga MM, Tan Y, Seheri ML, Halpin RA, Akopov A, Stucker KM, Fedorova NB, Shrivastava S, Duncan Steele A, Mwenda JM, Pickett BE, Das SR, Jeffrey Mphahlele M. Nyaga MM, et al. Among authors: shrivastava s. Infect Genet Evol. 2018 Sep;63:79-88. doi: 10.1016/j.meegid.2018.05.013. Epub 2018 May 18. Infect Genet Evol. 2018. PMID: 29782933 Free PMC article.
Sequencing and analysis of globally obtained human respiratory syncytial virus A and B genomes.
Bose ME, He J, Shrivastava S, Nelson MI, Bera J, Halpin RA, Town CD, Lorenzi HA, Noyola DE, Falcone V, Gerna G, De Beenhouwer H, Videla C, Kok T, Venter M, Williams JV, Henrickson KJ. Bose ME, et al. Among authors: shrivastava s. PLoS One. 2015 Mar 20;10(3):e0120098. doi: 10.1371/journal.pone.0120098. eCollection 2015. PLoS One. 2015. PMID: 25793751 Free PMC article.
Identification of Dezidougou Virus in a DAK AR 41524 Zika Virus Stock.
Shrivastava S, Puri V, Fedorova N, Amedeo P, Stockwell TB, Shabman RS, Rashid S, Pickett BE. Shrivastava S, et al. Genome Announc. 2017 Jul 27;5(30):e00605-17. doi: 10.1128/genomeA.00605-17. Genome Announc. 2017. PMID: 28751385 Free PMC article.
1,326 results