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A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming.
Proteins. 2007 Dec 1;69(4):823-31. doi: 10.1002/prot.21782.
Proteins. 2007.
PMID: 17910057
Discovering rules for protein-ligand specificity using support vector inductive logic programming.
Kelley LA, Shrimpton PJ, Muggleton SH, Sternberg MJ.
Kelley LA, et al. Among authors: shrimpton pj.
Protein Eng Des Sel. 2009 Sep;22(9):561-7. doi: 10.1093/protein/gzp035. Epub 2009 Jul 2.
Protein Eng Des Sel. 2009.
PMID: 19574295
Free PMC article.
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Isolation of a small molecule inhibitor of DNA base excision repair.
Madhusudan S, Smart F, Shrimpton P, Parsons JL, Gardiner L, Houlbrook S, Talbot DC, Hammonds T, Freemont PA, Sternberg MJ, Dianov GL, Hickson ID.
Madhusudan S, et al.
Nucleic Acids Res. 2005 Aug 19;33(15):4711-24. doi: 10.1093/nar/gki781. Print 2005.
Nucleic Acids Res. 2005.
PMID: 16113242
Free PMC article.
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Functional role for Tyr 31 in the catalytic cycle of chicken dihydrofolate reductase.
Shrimpton P, Mullaney A, Allemann RK.
Shrimpton P, et al.
Proteins. 2003 May 1;51(2):216-23. doi: 10.1002/prot.10370.
Proteins. 2003.
PMID: 12660990
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Pivotal role of Gly 121 in dihydrofolate reductase from Escherichia coli: the altered structure of a mutant enzyme may form the basis of its diminished catalytic performance.
Swanwick RS, Shrimpton PJ, Allemann RK.
Swanwick RS, et al. Among authors: shrimpton pj.
Biochemistry. 2004 Apr 13;43(14):4119-27. doi: 10.1021/bi036164k.
Biochemistry. 2004.
PMID: 15065854
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Role of water in the catalytic cycle of E. coli dihydrofolate reductase.
Shrimpton P, Allemann RK.
Shrimpton P, et al.
Protein Sci. 2002 Jun;11(6):1442-51. doi: 10.1110/ps.5060102.
Protein Sci. 2002.
PMID: 12021443
Free PMC article.
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Protein motions during catalysis by dihydrofolate reductases.
Allemann RK, Evans RM, Tey LH, Maglia G, Pang J, Rodriguez R, Shrimpton PJ, Swanwick RS.
Allemann RK, et al. Among authors: shrimpton pj.
Philos Trans R Soc Lond B Biol Sci. 2006 Aug 29;361(1472):1317-21. doi: 10.1098/rstb.2006.1865.
Philos Trans R Soc Lond B Biol Sci. 2006.
PMID: 16873119
Free PMC article.
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A safer environment for endo-urological equipment.
Shrimpton PJ.
Shrimpton PJ.
NATNEWS. 1990 Jun;27(6):5-6.
NATNEWS. 1990.
PMID: 2395454
No abstract available.
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