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High-temporal resolution profiling reveals distinct immune trajectories following the first and second doses of COVID-19 mRNA vaccines.
Rinchai D, Deola S, Zoppoli G, Kabeer BSA, Taleb S, Pavlovski I, Maacha S, Gentilcore G, Toufiq M, Mathew L, Liu L, Vempalli FR, Mubarak G, Lorenz S, Sivieri I, Cirmena G, Dentone C, Cuccarolo P, Giacobbe DR, Baldi F, Garbarino A, Cigolini B, Cremonesi P, Bedognetti M, Ballestrero A, Bassetti M, Hejblum BP, Augustine T, Van Panhuys N, Thiebaut R, Branco R, Chew T, Shojaei M, Short K, Feng CG; PREDICT-19 Consortium; Zughaier SM, De Maria A, Tang B, Ait Hssain A, Bedognetti D, Grivel JC, Chaussabel D. Rinchai D, et al. Among authors: short k. Sci Adv. 2022 Nov 11;8(45):eabp9961. doi: 10.1126/sciadv.abp9961. Epub 2022 Nov 11. Sci Adv. 2022. PMID: 36367935 Free PMC article.
Blood transcriptome responses in patients correlate with severity of COVID-19 disease.
Wang Y, Schughart K, Pelaia TM, Chew T, Kim K, Karvunidis T, Knippenberg B, Teoh S, Phu AL, Short KR, Iredell J, Thevarajan I, Audsley J, Macdonald S, Burcham J, McLean A; PREDICT-19 consortium; Tang B, Shojaei M. Wang Y, et al. Among authors: short kr. Front Immunol. 2023 Jan 20;13:1043219. doi: 10.3389/fimmu.2022.1043219. eCollection 2022. Front Immunol. 2023. PMID: 36741372 Free PMC article.
Pathway and Network Analyses Identify Growth Factor Signaling and MMP9 as Potential Mediators of Mitochondrial Dysfunction in Severe COVID-19.
Wang Y, Schughart K, Pelaia TM, Chew T, Kim K, Karvunidis T, Knippenberg B, Teoh S, Phu AL, Short KR, Iredell J, Thevarajan I, Audsley J, Macdonald S, Burcham J, Predict-Consortium, Tang B, McLean A, Shojaei M. Wang Y, et al. Among authors: short kr. Int J Mol Sci. 2023 Jan 28;24(3):2524. doi: 10.3390/ijms24032524. Int J Mol Sci. 2023. PMID: 36768847 Free PMC article.
Host transcriptomics and machine learning for secondary bacterial infections in patients with COVID-19: a prospective, observational cohort study.
Carney M, Pelaia TM, Chew T, Teoh S, Phu A, Kim K, Wang Y, Iredell J, Zerbib Y, McLean A, Schughart K, Tang B, Shojaei M, Short KR; PREDICT-19 consortium. Carney M, et al. Among authors: short kr. Lancet Microbe. 2024 Mar;5(3):e272-e281. doi: 10.1016/S2666-5247(23)00363-4. Epub 2024 Feb 1. Lancet Microbe. 2024. PMID: 38310908 Free article.
Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures.
Kulasinghe A, Tan CW, Ribeiro Dos Santos Miggiolaro AF, Monkman J, SadeghiRad H, Bhuva DD, Motta Junior JDS, Busatta Vaz de Paula C, Nagashima S, Baena CP, Souza-Fonseca-Guimaraes P, de Noronha L, McCulloch T, Rossi GR, Cooper C, Tang B, Short KR, Davis MJ, Souza-Fonseca-Guimaraes F, Belz GT, O'Byrne K. Kulasinghe A, et al. Among authors: short kr. Eur Respir J. 2022 Jun 2;59(6):2101881. doi: 10.1183/13993003.01881-2021. Print 2022 Jun. Eur Respir J. 2022. PMID: 34675048 Free PMC article.
IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study.
Shojaei M, Shamshirian A, Monkman J, Grice L, Tran M, Tan CW, Teo SM, Rodrigues Rossi G, McCulloch TR, Nalos M, Raei M, Razavi A, Ghasemian R, Gheibi M, Roozbeh F, Sly PD, Spann KM, Chew KY, Zhu Y, Xia Y, Wells TJ, Senegaglia AC, Kuniyoshi CL, Franck CL, Dos Santos AFR, de Noronha L, Motamen S, Valadan R, Amjadi O, Gogna R, Madan E, Alizadeh-Navaei R, Lamperti L, Zuñiga F, Nova-Lamperti E, Labarca G, Knippenberg B, Herwanto V, Wang Y, Phu A, Chew T, Kwan T, Kim K, Teoh S, Pelaia TM, Kuan WS, Jee Y, Iredell J, O'Byrne K, Fraser JF, Davis MJ, Belz GT, Warkiani ME, Gallo CS, Souza-Fonseca-Guimaraes F, Nguyen Q, Mclean A, Kulasinghe A, Short KR, Tang B. Shojaei M, et al. Among authors: short kr. Front Immunol. 2023 Jan 5;13:1060438. doi: 10.3389/fimmu.2022.1060438. eCollection 2022. Front Immunol. 2023. PMID: 36685600 Free PMC article.
Influenza in High-Risk Hosts-Lessons Learned from Animal Models.
Honce R, Wohlgemuth N, Meliopoulos VA, Short KR, Schultz-Cherry S. Honce R, et al. Cold Spring Harb Perspect Med. 2020 Dec 1;10(12):a038604. doi: 10.1101/cshperspect.a038604. Cold Spring Harb Perspect Med. 2020. PMID: 31871227 Free PMC article. Review.
480 results