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American Gut: an Open Platform for Citizen Science Microbiome Research.
mSystems. 2018 May 15;3(3):e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.
mSystems. 2018.
PMID: 29795809
Free PMC article.
Qiita: rapid, web-enabled microbiome meta-analysis.
Gonzalez A, Navas-Molina JA, Kosciolek T, McDonald D, Vázquez-Baeza Y, Ackermann G, DeReus J, Janssen S, Swafford AD, Orchanian SB, Sanders JG, Shorenstein J, Holste H, Petrus S, Robbins-Pianka A, Brislawn CJ, Wang M, Rideout JR, Bolyen E, Dillon M, Caporaso JG, Dorrestein PC, Knight R.
Gonzalez A, et al. Among authors: shorenstein j.
Nat Methods. 2018 Oct;15(10):796-798. doi: 10.1038/s41592-018-0141-9. Epub 2018 Oct 1.
Nat Methods. 2018.
PMID: 30275573
Free PMC article.
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Metagenomic covariation along densely sampled environmental gradients in the Red Sea.
Thompson LR, Williams GJ, Haroon MF, Shibl A, Larsen P, Shorenstein J, Knight R, Stingl U.
Thompson LR, et al. Among authors: shorenstein j.
ISME J. 2017 Jan;11(1):138-151. doi: 10.1038/ismej.2016.99. Epub 2016 Jul 15.
ISME J. 2017.
PMID: 27420030
Free PMC article.
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Formulated minimal-length synthetic small hairpin RNAs are potent inhibitors of hepatitis C virus in mice with humanized livers.
Ma H, Dallas A, Ilves H, Shorenstein J, MacLachlan I, Klumpp K, Johnston BH.
Ma H, et al. Among authors: shorenstein j.
Gastroenterology. 2014 Jan;146(1):63-6.e5. doi: 10.1053/j.gastro.2013.09.049. Epub 2013 Sep 27.
Gastroenterology. 2014.
PMID: 24076507
Free PMC article.
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Minimal-length Synthetic shRNAs Formulated with Lipid Nanoparticles are Potent Inhibitors of Hepatitis C Virus IRES-linked Gene Expression in Mice.
Dallas A, Ilves H, Shorenstein J, Judge A, Spitler R, Contag C, Wong SP, Harbottle RP, Maclachlan I, Johnston BH.
Dallas A, et al. Among authors: shorenstein j.
Mol Ther Nucleic Acids. 2013 Sep 17;2(9):e123. doi: 10.1038/mtna.2013.50.
Mol Ther Nucleic Acids. 2013.
PMID: 24045712
Free PMC article.
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Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing.
Dallas A, Ilves H, Ge Q, Kumar P, Shorenstein J, Kazakov SA, Cuellar TL, McManus MT, Behlke MA, Johnston BH.
Dallas A, et al. Among authors: shorenstein j.
Nucleic Acids Res. 2012 Oct;40(18):9255-71. doi: 10.1093/nar/gks662. Epub 2012 Jul 18.
Nucleic Acids Res. 2012.
PMID: 22810205
Free PMC article.
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Minimal-length short hairpin RNAs: the relationship of structure and RNAi activity.
Ge Q, Ilves H, Dallas A, Kumar P, Shorenstein J, Kazakov SA, Johnston BH.
Ge Q, et al. Among authors: shorenstein j.
RNA. 2010 Jan;16(1):106-17. doi: 10.1261/rna.1894510. Epub 2009 Dec 1.
RNA. 2010.
PMID: 19952116
Free PMC article.
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Effects of chemical modification on the potency, serum stability, and immunostimulatory properties of short shRNAs.
Ge Q, Dallas A, Ilves H, Shorenstein J, Behlke MA, Johnston BH.
Ge Q, et al. Among authors: shorenstein j.
RNA. 2010 Jan;16(1):118-30. doi: 10.1261/rna.1901810. Epub 2009 Nov 30.
RNA. 2010.
PMID: 19948766
Free PMC article.
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