Shiver AL - Search Results

1

Design, construction, and in vivo augmentation of a complex gut microbiome.

Cheng AG, Ho PY, Aranda-Díaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA. Cheng AG, et al. Among authors: shiver al. Cell. 2022 Sep 15;185(19):3617-3636.e19. doi: 10.1016/j.cell.2022.08.003. Epub 2022 Sep 6. Cell. 2022. PMID: 36070752 Free PMC article.

2

A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria.

Peters JM, Colavin A, Shi H, Czarny TL, Larson MH, Wong S, Hawkins JS, Lu CHS, Koo BM, Marta E, Shiver AL, Whitehead EH, Weissman JS, Brown ED, Qi LS, Huang KC, Gross CA. Peters JM, et al. Among authors: shiver al. Cell. 2016 Jun 2;165(6):1493-1506. doi: 10.1016/j.cell.2016.05.003. Epub 2016 May 26. Cell. 2016. PMID: 27238023 Free PMC article.

3

Cutting the Gordian Knot of the Microbiota.

Vasquez KS, Shiver AL, Huang KC. Vasquez KS, et al. Among authors: shiver al. Mol Cell. 2018 Jun 7;70(5):765-767. doi: 10.1016/j.molcel.2018.05.034. Epub 2018 Jun 7. Mol Cell. 2018. PMID: 29883604 Free PMC article.

4

Mechanically resolved imaging of bacteria using expansion microscopy.

Lim Y, Shiver AL, Khariton M, Lane KM, Ng KM, Bray SR, Qin J, Huang KC, Wang B. Lim Y, et al. Among authors: shiver al. PLoS Biol. 2019 Oct 17;17(10):e3000268. doi: 10.1371/journal.pbio.3000268. eCollection 2019 Oct. PLoS Biol. 2019. PMID: 31622337 Free PMC article.

5

Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments.

Liu H, Shiver AL, Price MN, Carlson HK, Trotter VV, Chen Y, Escalante V, Ray J, Hern KE, Petzold CJ, Turnbaugh PJ, Huang KC, Arkin AP, Deutschbauer AM. Liu H, et al. Among authors: shiver al. Cell Rep. 2021 Mar 2;34(9):108789. doi: 10.1016/j.celrep.2021.108789. Cell Rep. 2021. PMID: 33657378 Free PMC article.

6

Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs.

Shiver AL, Osadnik H, Peters JM, Mooney RA, Wu PI, Henry KK, Braberg H, Krogan NJ, Hu JC, Landick R, Huang KC, Gross CA. Shiver AL, et al. Mol Cell. 2021 May 20;81(10):2201-2215.e9. doi: 10.1016/j.molcel.2021.04.027. Mol Cell. 2021. PMID: 34019789 Free PMC article.

7

Rapid ordering of barcoded transposon insertion libraries of anaerobic bacteria.

Shiver AL, Culver R, Deutschbauer AM, Huang KC. Shiver AL, et al. Nat Protoc. 2021 Jun;16(6):3049-3071. doi: 10.1038/s41596-021-00531-3. Epub 2021 May 21. Nat Protoc. 2021. PMID: 34021295 Free PMC article.

8

M-TUBE enables large-volume bacterial gene delivery using a high-throughput microfluidic electroporation platform.

Huang PH, Chen S, Shiver AL, Culver RN, Huang KC, Buie CR. Huang PH, et al. Among authors: shiver al. PLoS Biol. 2022 Sep 6;20(9):e3001727. doi: 10.1371/journal.pbio.3001727. eCollection 2022 Sep. PLoS Biol. 2022. PMID: 36067229 Free PMC article.

9

Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron.

Arjes HA, Sun J, Liu H, Nguyen TH, Culver RN, Celis AI, Walton SJ, Vasquez KS, Yu FB, Xue KS, Newton D, Zermeno R, Weglarz M, Deutschbauer A, Huang KC, Shiver AL. Arjes HA, et al. Among authors: shiver al. BMC Biol. 2022 Dec 17;20(1):285. doi: 10.1186/s12915-022-01481-2. BMC Biol. 2022. PMID: 36527020 Free PMC article.

10

Covalent intermediate in the catalytic mechanism of the radical S-adenosyl-L-methionine methyl synthase RlmN trapped by mutagenesis.

McCusker KP, Medzihradszky KF, Shiver AL, Nichols RJ, Yan F, Maltby DA, Gross CA, Fujimori DG. McCusker KP, et al. Among authors: shiver al. J Am Chem Soc. 2012 Oct 31;134(43):18074-81. doi: 10.1021/ja307855d. Epub 2012 Oct 22. J Am Chem Soc. 2012. PMID: 23088750 Free PMC article.

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