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Page 1
A toolbox of machine learning software to support microbiome analysis.
Marcos-Zambrano LJ, López-Molina VM, Bakir-Gungor B, Frohme M, Karaduzovic-Hadziabdic K, Klammsteiner T, Ibrahimi E, Lahti L, Loncar-Turukalo T, Dhamo X, Simeon A, Nechyporenko A, Pio G, Przymus P, Sampri A, Trajkovik V, Lacruz-Pleguezuelos B, Aasmets O, Araujo R, Anagnostopoulos I, Aydemir Ö, Berland M, Calle ML, Ceci M, Duman H, Gündoğdu A, Havulinna AS, Kaka Bra KHN, Kalluci E, Karav S, Lode D, Lopes MB, May P, Nap B, Nedyalkova M, Paciência I, Pasic L, Pujolassos M, Shigdel R, Susín A, Thiele I, Truică CO, Wilmes P, Yilmaz E, Yousef M, Claesson MJ, Truu J, Carrillo de Santa Pau E. Marcos-Zambrano LJ, et al. Among authors: shigdel r. Front Microbiol. 2023 Nov 22;14:1250806. doi: 10.3389/fmicb.2023.1250806. eCollection 2023. Front Microbiol. 2023. PMID: 38075858 Free PMC article. Review.
Microbiome-based risk prediction in incident heart failure: a community challenge.
Erawijantari PP, Kartal E, Liñares-Blanco J, Laajala TD, Feldman LE; FINRISK Microbiome DREAM Challenge and ML4Microbiome Communities; Carmona-Saez P, Shigdel R, Claesson MJ, Bertelsen RJ, Gomez-Cabrero D, Minot S, Albrecht J, Chung V, Inouye M, Jousilahti P, Schultz JH, Friederich HC, Knight R, Salomaa V, Niiranen T, Havulinna AS, Saez-Rodriguez J, Levinson RT, Lahti L. Erawijantari PP, et al. Among authors: shigdel r. medRxiv [Preprint]. 2023 Oct 12:2023.10.12.23296829. doi: 10.1101/2023.10.12.23296829. medRxiv. 2023. PMID: 37873403 Free PMC article. Preprint.
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action.
D'Elia D, Truu J, Lahti L, Berland M, Papoutsoglou G, Ceci M, Zomer A, Lopes MB, Ibrahimi E, Gruca A, Nechyporenko A, Frohme M, Klammsteiner T, Pau ECS, Marcos-Zambrano LJ, Hron K, Pio G, Simeon A, Suharoschi R, Moreno-Indias I, Temko A, Nedyalkova M, Apostol ES, Truică CO, Shigdel R, Telalović JH, Bongcam-Rudloff E, Przymus P, Jordamović NB, Falquet L, Tarazona S, Sampri A, Isola G, Pérez-Serrano D, Trajkovik V, Klucar L, Loncar-Turukalo T, Havulinna AS, Jansen C, Bertelsen RJ, Claesson MJ. D'Elia D, et al. Among authors: shigdel r. Front Microbiol. 2023 Sep 25;14:1257002. doi: 10.3389/fmicb.2023.1257002. eCollection 2023. Front Microbiol. 2023. PMID: 37808321 Free PMC article.
Machine learning approaches in microbiome research: challenges and best practices.
Papoutsoglou G, Tarazona S, Lopes MB, Klammsteiner T, Ibrahimi E, Eckenberger J, Novielli P, Tonda A, Simeon A, Shigdel R, Béreux S, Vitali G, Tangaro S, Lahti L, Temko A, Claesson MJ, Berland M. Papoutsoglou G, et al. Among authors: shigdel r. Front Microbiol. 2023 Sep 22;14:1261889. doi: 10.3389/fmicb.2023.1261889. eCollection 2023. Front Microbiol. 2023. PMID: 37808286 Free PMC article. Review.
Indoor Airborne Microbiome and Endotoxin: Meteorological Events and Occupant Characteristics Are Important Determinants.
Amin H, Šantl-Temkiv T, Cramer C, Finster K, Real FG, Gislason T, Holm M, Janson C, Jögi NO, Jogi R, Malinovschi A, Marshall IPG, Modig L, Norbäck D, Shigdel R, Sigsgaard T, Svanes C, Thorarinsdottir H, Wouters IM, Schlünssen V, Bertelsen RJ. Amin H, et al. Among authors: shigdel r. Environ Sci Technol. 2023 Aug 15;57(32):11750-11766. doi: 10.1021/acs.est.3c01616. Epub 2023 Jul 31. Environ Sci Technol. 2023. PMID: 37523308 Free PMC article.
Burden of disease attributable to risk factors in European countries: a scoping literature review.
Gorasso V, Morgado JN, Charalampous P, Pires SM, Haagsma JA, Santos JV, Idavain J, Ngwa CH, Noguer I, Padron-Monedero A, Sarmiento R, Pinheiro V, Von der Lippe E, Jakobsen LS, Devleesschauwer B, Plass D; COST Action CA18218 participants. Gorasso V, et al. Arch Public Health. 2023 Jun 25;81(1):116. doi: 10.1186/s13690-023-01119-x. Arch Public Health. 2023. PMID: 37355706 Free PMC article.
Previous tuberculosis infection associated with increased frequency of asthma and respiratory symptoms in a Nordic-Baltic multicentre population study.
Gyawali S, López-Cervantes JP, Jõgi NO, Mustafa T, Johannessen A, Janson C, Holm M, Modig L, Cramer C, Gislason T, Svanes C, Shigdel R. Gyawali S, et al. Among authors: shigdel r. ERJ Open Res. 2023 May 22;9(3):00011-2023. doi: 10.1183/23120541.00011-2023. eCollection 2023 May. ERJ Open Res. 2023. PMID: 37228275 Free PMC article.
Cohort profile: the multigeneration Respiratory Health in Northern Europe, Spain and Australia (RHINESSA) cohort.
Svanes C, Johannessen A, Bertelsen RJ, Dharmage S, Benediktsdottir B, Bråbäck L, Gislason T, Holm M, Jõgi O, Lodge CJ, Malinovschi A, Martinez-Moratalla J, Oudin A, Sánchez-Ramos JL, Timm S, Janson C, Real FG, Schlünssen V; RHINESSA International Collaboration. Svanes C, et al. BMJ Open. 2022 Jun 2;12(6):e059434. doi: 10.1136/bmjopen-2021-059434. BMJ Open. 2022. PMID: 35654464 Free PMC article.
21 results