Shi-Kunne X - Search Results

1

In silico prediction and characterisation of secondary metabolite clusters in the plant pathogenic fungus Verticillium dahliae.

Shi-Kunne X, Jové RP, Depotter JRL, Ebert MK, Seidl MF, Thomma BPHJ. Shi-Kunne X, et al. FEMS Microbiol Lett. 2019 Apr 1;366(7):fnz081. doi: 10.1093/femsle/fnz081. FEMS Microbiol Lett. 2019. PMID: 31004487 Free PMC article.

2

The Genome of the Saprophytic Fungus Verticillium tricorpus Reveals a Complex Effector Repertoire Resembling That of Its Pathogenic Relatives.

Seidl MF, Faino L, Shi-Kunne X, van den Berg GC, Bolton MD, Thomma BP. Seidl MF, et al. Mol Plant Microbe Interact. 2015 Mar;28(3):362-73. doi: 10.1094/MPMI-06-14-0173-R. Mol Plant Microbe Interact. 2015. PMID: 25208342 Free article.

3

Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride.

Shi-Kunne X, Seidl MF, Faino L, Thomma BP. Shi-Kunne X, et al. Genome Announc. 2015 May 7;3(3):e00287-15. doi: 10.1128/genomeA.00287-15. Genome Announc. 2015. PMID: 25953169 Free PMC article.

4

Mind the gap; seven reasons to close fragmented genome assemblies.

Thomma BPHJ, Seidl MF, Shi-Kunne X, Cook DE, Bolton MD, van Kan JAL, Faino L. Thomma BPHJ, et al. Fungal Genet Biol. 2016 May;90:24-30. doi: 10.1016/j.fgb.2015.08.010. Epub 2015 Sep 2. Fungal Genet Biol. 2016. PMID: 26342853 Review.

5

Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen.

Faino L, Seidl MF, Shi-Kunne X, Pauper M, van den Berg GC, Wittenberg AH, Thomma BP. Faino L, et al. Among authors: shi kunne x. Genome Res. 2016 Aug;26(8):1091-100. doi: 10.1101/gr.204974.116. Epub 2016 Jun 20. Genome Res. 2016. PMID: 27325116 Free PMC article.

6

Verticillium dahliae LysM effectors differentially contribute to virulence on plant hosts.

Kombrink A, Rovenich H, Shi-Kunne X, Rojas-Padilla E, van den Berg GC, Domazakis E, de Jonge R, Valkenburg DJ, Sánchez-Vallet A, Seidl MF, Thomma BP. Kombrink A, et al. Among authors: shi kunne x. Mol Plant Pathol. 2017 May;18(4):596-608. doi: 10.1111/mpp.12520. Epub 2017 Feb 14. Mol Plant Pathol. 2017. PMID: 27911046 Free PMC article.

7

Evolution within the fungal genus Verticillium is characterized by chromosomal rearrangement and gene loss.

Shi-Kunne X, Faino L, van den Berg GCM, Thomma BPHJ, Seidl MF. Shi-Kunne X, et al. Environ Microbiol. 2018 Apr;20(4):1362-1373. doi: 10.1111/1462-2920.14037. Epub 2018 Jan 5. Environ Microbiol. 2018. PMID: 29282842

8

The Genome of the Fungal Pathogen Verticillium dahliae Reveals Extensive Bacterial to Fungal Gene Transfer.

Shi-Kunne X, van Kooten M, Depotter JRL, Thomma BPHJ, Seidl MF. Shi-Kunne X, et al. Genome Biol Evol. 2019 Mar 1;11(3):855-868. doi: 10.1093/gbe/evz040. Genome Biol Evol. 2019. PMID: 30799497 Free PMC article.

9

Dynamic virulence-related regions of the plant pathogenic fungus Verticillium dahliae display enhanced sequence conservation.

Depotter JRL, Shi-Kunne X, Missonnier H, Liu T, Faino L, van den Berg GCM, Wood TA, Zhang B, Jacques A, Seidl MF, Thomma BPHJ. Depotter JRL, et al. Among authors: shi kunne x. Mol Ecol. 2019 Aug;28(15):3482-3495. doi: 10.1111/mec.15168. Epub 2019 Jul 29. Mol Ecol. 2019. PMID: 31282048 Free PMC article.

10

Dynamics in Secondary Metabolite Gene Clusters in Otherwise Highly Syntenic and Stable Genomes in the Fungal Genus Botrytis.

Valero-Jiménez CA, Steentjes MBF, Slot JC, Shi-Kunne X, Scholten OE, van Kan JAL. Valero-Jiménez CA, et al. Among authors: shi kunne x. Genome Biol Evol. 2020 Dec 6;12(12):2491-2507. doi: 10.1093/gbe/evaa218. Genome Biol Evol. 2020. PMID: 33283866 Free PMC article.

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