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Multiple Small-Effect Alleles of Indica Origin Enhance High Iron-Associated Stress Tolerance in Rice Under Field Conditions in West Africa.
Melandri G, Sikirou M, Arbelaez JD, Shittu A, Semwal VK, Konaté KA, Maji AT, Ngaujah SA, Akintayo I, Govindaraj V, Shi Y, Agosto-Peréz FJ, Greenberg AJ, Atlin G, Ramaiah V, McCouch SR. Melandri G, et al. Among authors: shi y. Front Plant Sci. 2021 Jan 15;11:604938. doi: 10.3389/fpls.2020.604938. eCollection 2020. Front Plant Sci. 2021. PMID: 33584748 Free PMC article.
A Coordinated Suite of Wild-Introgression Lines in Indica and Japonica Elite Backgrounds.
Singh N, Wang DR, Ali L, Kim H, Akther KM, Harrington SE, Kang JW, Shakiba E, Shi Y, DeClerck G, Meadows B, Govindaraj V, Ahn SN, Eizenga GC, McCouch SR. Singh N, et al. Among authors: shi y. Front Plant Sci. 2020 Nov 12;11:564824. doi: 10.3389/fpls.2020.564824. eCollection 2020. Front Plant Sci. 2020. PMID: 33281840 Free PMC article.
An imputation platform to enhance integration of rice genetic resources.
Wang DR, Agosto-Pérez FJ, Chebotarov D, Shi Y, Marchini J, Fitzgerald M, McNally KL, Alexandrov N, McCouch SR. Wang DR, et al. Among authors: shi y. Nat Commun. 2018 Aug 29;9(1):3519. doi: 10.1038/s41467-018-05538-1. Nat Commun. 2018. PMID: 30158584 Free PMC article.
An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies.
Morales KY, Singh N, Perez FA, Ignacio JC, Thapa R, Arbelaez JD, Tabien RE, Famoso A, Wang DR, Septiningsih EM, Shi Y, Kretzschmar T, McCouch SR, Thomson MJ. Morales KY, et al. Among authors: shi y. PLoS One. 2020 May 14;15(5):e0232479. doi: 10.1371/journal.pone.0232479. eCollection 2020. PLoS One. 2020. PMID: 32407369 Free PMC article.
Open access resources for genome-wide association mapping in rice.
McCouch SR, Wright MH, Tung CW, Maron LG, McNally KL, Fitzgerald M, Singh N, DeClerck G, Agosto-Perez F, Korniliev P, Greenberg AJ, Naredo ME, Mercado SM, Harrington SE, Shi Y, Branchini DA, Kuser-Falcão PR, Leung H, Ebana K, Yano M, Eizenga G, McClung A, Mezey J. McCouch SR, et al. Among authors: shi y. Nat Commun. 2016 Feb 4;7:10532. doi: 10.1038/ncomms10532. Nat Commun. 2016. PMID: 26842267 Free PMC article.
Genetic architecture of root and shoot ionomes in rice (Oryza sativa L.).
Cobb JN, Chen C, Shi Y, Maron LG, Liu D, Rutzke M, Greenberg A, Craft E, Shaff J, Paul E, Akther K, Wang S, Kochian LV, Zhang D, Zhang M, McCouch SR. Cobb JN, et al. Among authors: shi y. Theor Appl Genet. 2021 Aug;134(8):2613-2637. doi: 10.1007/s00122-021-03848-5. Epub 2021 May 20. Theor Appl Genet. 2021. PMID: 34018019 Free PMC article.
Corrigendum: Open access resources for genome-wide association mapping in rice.
McCouch SR, Wright MH, Tung CW, Maron LG, McNally KL, Fitzgerald M, Singh N, DeClerck G, Perez FA, Korniliev P, Greenberg AJ, Naredo ME, Mercado SM, Harrington SE, Shi Y, Branchini DA, Kuser-Falcão PR, Leung H, Ebana K, Yano M, Eizenga G, McClung A, Mezey J. McCouch SR, et al. Among authors: shi y. Nat Commun. 2016 Apr 20;7:11346. doi: 10.1038/ncomms11346. Nat Commun. 2016. PMID: 27094317 Free PMC article. No abstract available.
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