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Normalized Workflow to Optimize Hybrid De Novo Transcriptome Assembly for Non-Model Species: A Case Study in Lilium ledebourii (Baker) Boiss.
Plants (Basel). 2022 Sep 10;11(18):2365. doi: 10.3390/plants11182365.
Plants (Basel). 2022.
PMID: 36145766
Free PMC article.
Complete chloroplast genome of Lilium ledebourii (Baker) Boiss and its comparative analysis: lights into selective pressure and adaptive evolution.
Sheikh-Assadi M, Naderi R, Kafi M, Fatahi R, Salami SA, Shariati V.
Sheikh-Assadi M, et al.
Sci Rep. 2022 Jun 7;12(1):9375. doi: 10.1038/s41598-022-13449-x.
Sci Rep. 2022.
PMID: 35672390
Free PMC article.
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Optimizing an efficient ensemble approach for high-quality de novo transcriptome assembly of Thymus daenensis.
Ahmadi H, Sheikh-Assadi M, Fatahi R, Zamani Z, Shokrpour M.
Ahmadi H, et al. Among authors: sheikh assadi m.
Sci Rep. 2023 Jul 31;13(1):12415. doi: 10.1038/s41598-023-39620-6.
Sci Rep. 2023.
PMID: 37524806
Free PMC article.
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Phytosulfokine α (PSKα) delays senescence and reinforces SUMO1/SUMO E3 ligase SIZ1 signaling pathway in cut rose flowers (Rosa hybrida cv. Angelina).
Aghdam MS, Ebrahimi A, Sheikh-Assadi M.
Aghdam MS, et al. Among authors: sheikh assadi m.
Sci Rep. 2021 Dec 1;11(1):23227. doi: 10.1038/s41598-021-02712-2.
Sci Rep. 2021.
PMID: 34853400
Free PMC article.
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Employing exogenous melatonin applying confers chilling tolerance in tomato fruits by upregulating ZAT2/6/12 giving rise to promoting endogenous polyamines, proline, and nitric oxide accumulation by triggering arginine pathway activity.
Aghdam MS, Luo Z, Jannatizadeh A, Sheikh-Assadi M, Sharafi Y, Farmani B, Fard JR, Razavi F.
Aghdam MS, et al. Among authors: sheikh assadi m.
Food Chem. 2019 Mar 1;275:549-556. doi: 10.1016/j.foodchem.2018.09.157. Epub 2018 Sep 25.
Food Chem. 2019.
PMID: 30724232
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Mycorrhizal limonium sinuatum (L.) mill. Enhances accumulation of lead and cadmium.
Sheikh-Assadi M, Khandan-Mirkohi A, Alemardan A, Moreno-Jiménez E.
Sheikh-Assadi M, et al.
Int J Phytoremediation. 2015;17(1-6):556-62. doi: 10.1080/15226514.2014.922928.
Int J Phytoremediation. 2015.
PMID: 25747242
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RNA-seq analysis reveals narrow differential gene expression in MEP and MVA pathways responsible for phytochemical divergence in extreme genotypes of Thymus daenensis Celak.
Ahmadi H, Fatahi R, Zamani Z, Shokrpour M, Sheikh-Assadi M, Poczai P.
Ahmadi H, et al. Among authors: sheikh assadi m.
BMC Genomics. 2024 Mar 4;25(1):237. doi: 10.1186/s12864-024-10164-x.
BMC Genomics. 2024.
PMID: 38438980
Free PMC article.
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